Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0549 ATGGACTTCTTACAGTCTCTGGATCCTCAAATCCTTCTAGGTTTGGCTGTGGCTGTTTTAGCCCTTGCCGTTGGTGCTTTCTATGTATTATCCTCGTCCAAAAAAAGCAAATCCAGAGGTTGCTTGAATCCAGAGGTTTTCAAGGAGTTTAAACTTGTCAAGCGCCTGCAGCTGAGCCATAATGTGGCGAAGTTTACATTTACACTCCCGAATCCTACTTCAGTTCTAGGTCTTCCCATTGGACAACATATAAGTTGCAGGGGCAAGGATGGCCAAGGTGAAGAGGTTATCAAACCGTACACACCTATTACTTTGGATTCTGATGTTGGATATTTTGAATTGGTCATAAAGATGTATCCTCAAGGAAGGATGTCACACCATTTCCGCCAGATGCGTGTAGGCGATTTTCTTGCTGTAAAGGGGCCCAAGGGGCGTTTCAGGTATCAACCCGGCGAGGTCAGAGCATTTGGGATGCTTGCTGGAGGCTCTGGCATTACGCCTATGTATCAAGTTGCTCGAGCAATATTAGAAAATCCAAATGACAAAACGAAGGTACATCTCATTTATGCCAATGTCACCTATGAGGACATTCTCTTAAAGGAGGAGTTGGATCTTCTTGCCAAAAGGTACCCGGATAGCTTCAAGCTCTATTATGTCTTAAACCAGCCTCCTGAAGCGTGGGATGGAGGTGTCGGATTCGTATCAAAGGAGATGATTCAAGCCCACTGCCCTGCTCCTGCTTCTGATATTCAGATTCTAAGGTGTGGACCACCACCAATGAACAAGGCCATGGCTGCTCATCTGGAAGATCTTGGATATACACCTGAGATGCTGTTCATGTTCTGA 846 45.51 MDFLQSLDPQILLGLAVAVLALAVGAFYVLSSSKKSKSRGCLNPEVFKEFKLVKRLQLSHNVAKFTFTLPNPTSVLGLPIGQHISCRGKDGQGEEVIKPYTPITLDSDVGYFELVIKMYPQGRMSHHFRQMRVGDFLAVKGPKGRFRYQPGEVRAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTYEDILLKEELDLLAKRYPDSFKLYYVLNQPPEAWDGGVGFVSKEMIQAHCPAPASDIQILRCGPPPMNKAMAAHLEDLGYTPEMLFMF 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18828661 18834142 + CmPI595203_04g005490.1 Cmu04g0549 414134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0549 281 Gene3D - 140 281 IPR039261 -
Cmu04g0549 281 PRINTS Cytochrome B5 reductase signature 157 176 - -
Cmu04g0549 281 PRINTS Cytochrome B5 reductase signature 251 259 - -
Cmu04g0549 281 PRINTS Cytochrome B5 reductase signature 134 148 - -
Cmu04g0549 281 PRINTS Cytochrome B5 reductase signature 76 87 - -
Cmu04g0549 281 PRINTS Cytochrome B5 reductase signature 98 105 - -
Cmu04g0549 281 PRINTS Cytochrome B5 reductase signature 195 206 - -
Cmu04g0549 281 PANTHER NADH-CYTOCHROME B5 REDUCTASE 19 281 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Cmu04g0549 281 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
Cmu04g0549 281 FunFam NADH-cytochrome b5 reductase 139 281 - -
Cmu04g0549 281 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 45 149 IPR017927 GO:0016491(InterPro)
Cmu04g0549 281 FunFam NADH-cytochrome b5 reductase 40 139 - -
Cmu04g0549 281 Pfam Oxidoreductase NAD-binding domain 158 264 IPR001433 GO:0016491(InterPro)
Cmu04g0549 281 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 137 278 IPR039261 -
Cmu04g0549 281 Pfam Oxidoreductase FAD-binding domain 50 148 IPR008333 -
Cmu04g0549 281 CDD cyt_b5_reduct_like 50 281 - -
Cmu04g0549 281 Gene3D Translation factors 40 139 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2404 Cmu-Chr2:37479867 Cmu04g0549 Cmu-Chr4:18828661 1.30E-118 dispersed
Cmu04g0549 Cmu-Chr4:18828661 Cmu10g2408 Cmu-Chr10:30555041 4.50E-135 dispersed
Cmu04g0549 Cmu-Chr4:18828661 Cmu03g1518 Cmu-Chr3:11989221 1.40E-43 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0549 K00326 - csv:101212569 529.25