Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0549 ATGGACTTCTTACAGTCTCTGGATCCTCAAATCCTTCTAGGTTTGGCTGTGGCTGTTTTAGCCCTTGCCGTTGGTGCTTTCTATGTATTATCCTCGTCCAAAAAAAGCAAATCCAGAGGTTGCTTGAATCCAGAGGTTTTCAAGGAGTTTAAACTTGTCAAGCGCCTGCAGCTGAGCCATAATGTGGCGAAGTTTACATTTACACTCCCGAATCCTACTTCAGTTCTAGGTCTTCCCATTGGACAACATATAAGTTGCAGGGGCAAGGATGGCCAAGGTGAAGAGGTTATCAAACCGTACACACCTATTACTTTGGATTCTGATGTTGGATATTTTGAATTGGTCATAAAGATGTATCCTCAAGGAAGGATGTCACACCATTTCCGCCAGATGCGTGTAGGCGATTTTCTTGCTGTAAAGGGGCCCAAGGGGCGTTTCAGGTATCAACCCGGCGAGGTCAGAGCATTTGGGATGCTTGCTGGAGGCTCTGGCATTACGCCTATGTATCAAGTTGCTCGAGCAATATTAGAAAATCCAAATGACAAAACGAAGGTACATCTCATTTATGCCAATGTCACCTATGAGGACATTCTCTTAAAGGAGGAGTTGGATCTTCTTGCCAAAAGGTACCCGGATAGCTTCAAGCTCTATTATGTCTTAAACCAGCCTCCTGAAGCGTGGGATGGAGGTGTCGGATTCGTATCAAAGGAGATGATTCAAGCCCACTGCCCTGCTCCTGCTTCTGATATTCAGATTCTAAGGTGTGGACCACCACCAATGAACAAGGCCATGGCTGCTCATCTGGAAGATCTTGGATATACACCTGAGATGCTGTTCATGTTCTGA 846 45.51 MDFLQSLDPQILLGLAVAVLALAVGAFYVLSSSKKSKSRGCLNPEVFKEFKLVKRLQLSHNVAKFTFTLPNPTSVLGLPIGQHISCRGKDGQGEEVIKPYTPITLDSDVGYFELVIKMYPQGRMSHHFRQMRVGDFLAVKGPKGRFRYQPGEVRAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTYEDILLKEELDLLAKRYPDSFKLYYVLNQPPEAWDGGVGFVSKEMIQAHCPAPASDIQILRCGPPPMNKAMAAHLEDLGYTPEMLFMF 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18828661 18834142 + CmPI595203_04g005490.1 Cmu04g0549 414134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0549 281 Gene3D - 140 281 IPR039261 -
Cmu04g0549 281 PRINTS Cytochrome B5 reductase signature 157 176 - -
Cmu04g0549 281 PRINTS Cytochrome B5 reductase signature 251 259 - -
Cmu04g0549 281 PRINTS Cytochrome B5 reductase signature 134 148 - -
Cmu04g0549 281 PRINTS Cytochrome B5 reductase signature 76 87 - -
Cmu04g0549 281 PRINTS Cytochrome B5 reductase signature 98 105 - -
Cmu04g0549 281 PRINTS Cytochrome B5 reductase signature 195 206 - -
Cmu04g0549 281 PANTHER NADH-CYTOCHROME B5 REDUCTASE 19 281 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Cmu04g0549 281 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
Cmu04g0549 281 FunFam NADH-cytochrome b5 reductase 139 281 - -
Cmu04g0549 281 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 45 149 IPR017927 GO:0016491(InterPro)
Cmu04g0549 281 FunFam NADH-cytochrome b5 reductase 40 139 - -
Cmu04g0549 281 Pfam Oxidoreductase NAD-binding domain 158 264 IPR001433 GO:0016491(InterPro)
Cmu04g0549 281 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 137 278 IPR039261 -
Cmu04g0549 281 Pfam Oxidoreductase FAD-binding domain 50 148 IPR008333 -
Cmu04g0549 281 CDD cyt_b5_reduct_like 50 281 - -
Cmu04g0549 281 Gene3D Translation factors 40 139 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0549 K00326 - - csv:101212569 529.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2404 Cmu-Chr2:37479867 Cmu04g0549 Cmu-Chr4:18828661 1.30E-118 dispersed
Cmu04g0549 Cmu-Chr4:18828661 Cmu10g2408 Cmu-Chr10:30555041 4.50E-135 dispersed
Cmu04g0549 Cmu-Chr4:18828661 Cmu03g1518 Cmu-Chr3:11989221 1.40E-43 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu05g0363 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.5e-51 199.1
Cmu01g0022 . 23 138 NADPH P450 reductases AT5G53560 78.4 5.6e-51 197.2
Cmu06g0773 . 1 133 NADPH P450 reductases AT5G53560 64.7 9.9e-48 186.4
Cmu07g0244 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Cmu05g0363 . 1 132 NADPH P450 reductases AT5G48810 64.9 7.9e-48 186.8
Cmu06g0773 . 1 133 NADPH P450 reductases AT5G48810 60.7 3.3e-46 181.4
Cmu07g0244 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.2e-45 178.7
Cmu01g0022 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.1e-40 162.2
Cmu05g0363 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.3e-51 196.8
Cmu06g0773 . 22 133 NADPH P450 reductases AT2G32720 78.6 1.4e-46 182.6
Cmu07g0244 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.1e-42 166.8
Cmu01g0022 . 18 137 NADPH P450 reductases AT2G32720 65.0 9.0e-41 163.3
Cmu04g0549 . 2 281 NADPH P450 reductases AT5G17770 81.4 1.5e-130 462.6
Cmu10g2408 . 2 280 NADPH P450 reductases AT5G17770 78.1 7.7e-127 450.3
Cmu02g2404 . 10 282 NADPH P450 reductases AT5G17770 73.3 3.6e-116 414.8
Cmu05g0363 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.5e-51 199.1
Cmu01g0022 . 23 138 NADPH P450 reductases AT5G53560 78.4 5.6e-51 197.2
Cmu06g0773 . 1 133 NADPH P450 reductases AT5G53560 64.7 9.9e-48 186.4
Cmu07g0244 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Cmu05g0363 . 1 132 NADPH P450 reductases AT5G48810 64.9 7.9e-48 186.8
Cmu06g0773 . 1 133 NADPH P450 reductases AT5G48810 60.7 3.3e-46 181.4
Cmu07g0244 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.2e-45 178.7
Cmu01g0022 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.1e-40 162.2
Cmu05g0363 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.3e-51 196.8
Cmu06g0773 . 22 133 NADPH P450 reductases AT2G32720 78.6 1.4e-46 182.6
Cmu07g0244 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.1e-42 166.8
Cmu01g0022 . 18 137 NADPH P450 reductases AT2G32720 65.0 9.0e-41 163.3
Cmu04g0549 . 2 281 NADPH P450 reductases AT5G17770 81.4 1.5e-130 462.6
Cmu10g2408 . 2 280 NADPH P450 reductases AT5G17770 78.1 7.7e-127 450.3
Cmu02g2404 . 10 282 NADPH P450 reductases AT5G17770 73.3 3.6e-116 414.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86