Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0555 ATGGCTGCTTACGCTTTGCTCGGCGATTCCACCCCCCGTGTTAATGGTGGTTTTGATGATAGTCCTTTGACCAGTGCTTCCACAAATAGCAACGGCAGTGACGAACATAATCATCAACAAATTGTTCAAGTTCAAGTCCAGGTTGCTCAACCGCGGTTGCCGGTTGGAAAAATGGTGCGGAAGAGAATCGCGTCGGAGATGGAGATTGAAGGCGGCGGCGGCGGTGGAGGAGGAGTTACTGCCGCTGTCCACCCTCGGTTTTGCCGGCGGAGTTTAGCTTCTGATCGTCCTTTTGCAGGTGGAGAAAATAAGGCGAATGCGAATGCGAATTATTGTTCTTCAAACCCTAGCCATGGCGGTGGTAACCACTCCACTGTGCATAATTTAACCGCTCTGACGTCAGTTGTAATCGAAGGGTCAAATTTATCAAATCCTCCTTCTGGTTCTGATGCTACGGTATCTTCCACTACCTCCAACAATAATCTTCTTGATAGTACTCTTCCTGTTCTTCGTCCTCAGCCCCACCATCACCATTTGCAGAATCCTGCAGTCTGTGGTTTTTCTGGGTTGCCTTTGTTTCCACCGGAATTAAATCACCACCACAAGTTAAATACTCGCAATAATCCTTTTCCCCTTCCTAATCCATCTCAGGTTCTTCATAATCCTCCCACTACTGCAACTACCTCCATTATCGCCGCCGCTTCTTCCCCTATGGATGATTCCTCCGCCACCGCTTGGATCGACGGCATCATTAAGGACTTAATCCATAGCTCCACCGCCATATCCATTCCTCAGCTCATTCAGAACGTTCGTGAGATTATCTACCCTTGTAACCCCAATCTTGCGAATCTTCTTGAGTTTCGTCTTCGTACTTTGACGGACCCTAGTGTTCCTAACTTCGCCGCTGAGGATCATCGCGTGAGGAAATCCCCCTTACCGTTGCCGCCGCCGGTGGCTGGGCTGGGGTTGCAGCAGAGGCAGTTCAACCAAGAGCAGCATGAGCAAGAACAGGATTGTTCTGGATTGAAGCTTAATCTCGATTCTTCTTCTCTGCATAATCTTCCTAATTTTCCCTCTCAACCGCCGTTTCATGAGCCGTATCTTCAATGGGGAACAACCCCTCCTCCGGTCCCCACTCCCTCCGCCGCTGCCGCCGGCGAGGATGCCTTACAGCGCCTCCCTGGTCATCATCAACTTAATCTCTCTTCCATTACACCATCGCCGCTTGTTTCTCTAAACCATGTCCCTTCAAAGCCACAATCGGAACAGCAGAACTCCTGTCCGGTCAATGCAAAGGCAGCGGTGGCACAGCCAGCTCCAGCGCCACCGCCGTCCACGAGCAATAACCCTTCAGCAACTGCTTTGCTGATTAGAGAGATAAAAGAGGAGATGAGGCAACAGAAGAGAGACGAAGAAGGTTTACACCTCTTGACTTTGCTTCTTCAATGTGCAGAAGCAGTTTCTGCTGATAATTTAGAAGAAGCCAACAAGATGCTCTTGGAAATCTCCGAGTTATCAACACCGTTCGGCACATCGGCGCAGAGGGTGGCGGCGTATTTCTCAGAAGCAATGTCCGCGAGGCTTGTGAGCTCTTGTTTAGGCATATATGCAGCTCTGCCGCCGTCGTTGGTGCCTCATACACACAGCCAGAAAATAGCCTCAGCCTTCCAAGTCTTCAATGGCATAAGCCCATTTGTCAAATTCTCACACTTCACAGCCAATCAAGCCATACAAGAAGCTTTCGAAAGAGAAGAGAGAGTTCACATTATAGATCTAGACATCATGCAAGGCCTTCAATGGCCTGGCTTGTTCCACATCTTGGCATCTAGACCCGGCGGACCGCCCTACGTTCGGCTTACGGGGCTGGGGACCTCTCAGGAGGTTCTTGAAGCCACTGGCAAACGCCTCACTGAATTTGCCGAGAAGCTTGGCCTTCCCTTCGATTTCTTTCCTGTGGCTGATAAAATTGGCAATTTAGACTTGGAGAGGCTCAACGTGAGCAAAAGGGAAGCCGTTGCCGTCCATTGGATGCAACATTCTCTTTATGAAGTCACTGGTTCTGATTCCAATACGCTATGGCTTTTGCAAAGATTGGCTCCAAAAGTGGTGACGGTGGTGGAACAAGATCTGAGCCACACAGGGTCTTTCTTGGGGAGATTCGTAGAGGCCATTCATTACTATTCAGCACTGTTTGACTCATTGGGTGTGAGCTATGGCGAAGAGAGTGAAGAAAGGCACTTAGTTGAGCAGCAACTATTATCAAGGGAGATCAGAAATGTCCTCGCAGTCGGAGGGCCGTCGAGGAGCGGCGAAGTGAAGTTCCAAAACTGGAGAGAAAAGCTGCAGCAATCTGGGTTTAAAGGCATTTCCCTCGCCGGAAATGCTGCAACTCAAGCCACTCTCCTCCTCGGAATGTTCCCTTCCGATGGGTATACGCTTGTAGAAGACAATGGGACTCTGAAACTTGGGTGGAAGGATCTTTGTTTGCTCACAGCCTCGGCTTGGAAACCGCCGTTTCTTCATCATGCTGCGGCGGCTGCTGCACCGGCTGCCACCAACAACCACATTCCCCGGTACTGA 2580 50.16 MAAYALLGDSTPRVNGGFDDSPLTSASTNSNGSDEHNHQQIVQVQVQVAQPRLPVGKMVRKRIASEMEIEGGGGGGGGVTAAVHPRFCRRSLASDRPFAGGENKANANANYCSSNPSHGGGNHSTVHNLTALTSVVIEGSNLSNPPSGSDATVSSTTSNNNLLDSTLPVLRPQPHHHHLQNPAVCGFSGLPLFPPELNHHHKLNTRNNPFPLPNPSQVLHNPPTTATTSIIAAASSPMDDSSATAWIDGIIKDLIHSSTAISIPQLIQNVREIIYPCNPNLANLLEFRLRTLTDPSVPNFAAEDHRVRKSPLPLPPPVAGLGLQQRQFNQEQHEQEQDCSGLKLNLDSSSLHNLPNFPSQPPFHEPYLQWGTTPPPVPTPSAAAAGEDALQRLPGHHQLNLSSITPSPLVSLNHVPSKPQSEQQNSCPVNAKAAVAQPAPAPPPSTSNNPSATALLIREIKEEMRQQKRDEEGLHLLTLLLQCAEAVSADNLEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAALPPSLVPHTHSQKIASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSQEVLEATGKRLTEFAEKLGLPFDFFPVADKIGNLDLERLNVSKREAVAVHWMQHSLYEVTGSDSNTLWLLQRLAPKVVTVVEQDLSHTGSFLGRFVEAIHYYSALFDSLGVSYGEESEERHLVEQQLLSREIRNVLAVGGPSRSGEVKFQNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWKPPFLHHAAAAAAPAATNNHIPRY 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18938172 18941185 + CmPI595203_04g005550.1 Cmu04g0555 414140

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0555 859 MobiDBLite consensus disorder prediction 11 37 - -
Cmu04g0555 859 MobiDBLite consensus disorder prediction 139 167 - -
Cmu04g0555 859 MobiDBLite consensus disorder prediction 399 431 - -
Cmu04g0555 859 MobiDBLite consensus disorder prediction 351 383 - -
Cmu04g0555 859 ProSiteProfiles GRAS family profile. 467 836 IPR005202 -
Cmu04g0555 859 MobiDBLite consensus disorder prediction 399 451 - -
Cmu04g0555 859 MobiDBLite consensus disorder prediction 17 37 - -
Cmu04g0555 859 MobiDBLite consensus disorder prediction 139 168 - -
Cmu04g0555 859 Pfam GRAS domain family 477 836 IPR005202 -
Cmu04g0555 859 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 459 835 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009630(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0048366(PANTHER)|GO:0051457(PANTHER)|GO:0090610(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0555 K27742 - - csv:101205286 1417.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0555 Cmu-Chr4:18938172 Cmu07g1077 Cmu-Chr7:25689386 4.00E-134 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g4 Blo01g01029 . Bda01g00083 . . . . Bma10g00259 . . Cma03g00259 Cma07g01178 Car03g00224 Car07g01146 Sed14g0535 . . Bhi03g02273 Tan03g0654 Cmetu08g1297 . Hepe04g0646 . . Cla04g00521 Cam04g0509 Cec04g0727 Cco04g0775 Clacu04g0554 Cmu04g0555 . . . . . . Csa04g01154 Chy08g00536 . . . . . . Bpe02g00947 . . . Cmo03g00275 Cmo07g01227 . . . . . Cpe19g00183 . . . . . . . Cla10g01611 Cam10g1658 Cec10g1707 Cco10g1671 Clacu10g1675 Cmu10g2430 Cre10g1808 . . . Cme08g02035
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu10g2833 . 74 753 GRAS Transcription Factor Family AT2G37650 54.4 2.9e-199 692.2
Cmu03g0756 . 314 696 GRAS Transcription Factor Family AT3G46600 56.9 3.0e-127 452.6
Cmu01g1692 . 50 468 GRAS Transcription Factor Family AT3G49950 60.0 1.1e-134 476.9
Cmu07g1077 . 36 443 GRAS Transcription Factor Family AT5G41920 65.9 2.5e-147 518.8
Cmu04g0555 . 447 839 GRAS Transcription Factor Family AT5G41920 55.5 2.5e-115 412.5
Cmu01g1880 . 1 600 GRAS Transcription Factor Family AT5G66770 56.7 2.8e-171 599.0
Cmu07g0917 . 8 553 GRAS Transcription Factor Family AT5G66770 58.7 4.6e-166 581.6
Cmu10g1269 . 45 544 GRAS Transcription Factor Family AT1G50600 58.1 6.8e-161 564.3
Cmu02g0941 . 57 521 GRAS Transcription Factor Family AT1G50600 58.6 7.1e-150 527.7
Cmu01g2083 . 111 548 GRAS Transcription Factor Family AT1G50600 56.9 1.4e-142 503.4
Cmu01g0606 . 44 581 GRAS Transcription Factor Family AT1G14920 67.5 1.6e-205 712.6
Cmu03g1456 . 48 599 GRAS Transcription Factor Family AT1G14920 61.3 2.6e-184 642.1
Cmu05g1241 . 32 555 GRAS Transcription Factor Family AT1G14920 56.3 6.0e-157 551.2
Cmu10g1189 . 34 401 GRAS Transcription Factor Family AT1G55580 51.9 2.2e-104 376.3
Cmu03g1456 . 48 596 GRAS Transcription Factor Family AT1G66350 60.3 3.9e-177 618.2
Cmu01g0606 . 1 579 GRAS Transcription Factor Family AT1G66350 56.6 9.8e-173 603.6
Cmu05g1241 . 1 554 GRAS Transcription Factor Family AT1G66350 55.8 3.9e-161 565.1
Cmu02g1999 . 251 771 GRAS Transcription Factor Family AT1G07520 50.5 6.0e-141 498.0
Cmu02g0941 . 19 518 GRAS Transcription Factor Family AT5G48150 64.0 1.1e-176 616.7
Cmu10g1269 . 17 544 GRAS Transcription Factor Family AT5G48150 58.9 1.1e-173 606.7
Cmu01g2083 . 16 548 GRAS Transcription Factor Family AT5G48150 52.0 1.6e-151 533.1
Cmu01g0606 . 46 578 GRAS Transcription Factor Family AT2G01570 68.4 2.1e-211 732.3
Cmu03g1456 . 49 597 GRAS Transcription Factor Family AT2G01570 62.9 2.1e-187 652.5
Cmu05g1241 . 31 555 GRAS Transcription Factor Family AT2G01570 58.2 4.0e-162 568.5
Cmu03g1456 . 48 596 GRAS Transcription Factor Family AT1G66350 60.3 3.9e-177 618.2
Cmu01g0606 . 1 579 GRAS Transcription Factor Family AT1G66350 56.6 9.8e-173 603.6
Cmu05g1241 . 1 554 GRAS Transcription Factor Family AT1G66350 55.8 3.9e-161 565.1
Cmu03g1456 . 49 597 GRAS Transcription Factor Family AT3G03450 61.8 1.7e-178 622.9
Cmu01g0606 . 10 578 GRAS Transcription Factor Family AT3G03450 58.2 1.5e-171 599.7
Cmu05g1241 . 31 555 GRAS Transcription Factor Family AT3G03450 58.3 1.0e-159 560.5
Cmu03g1456 . 48 599 GRAS Transcription Factor Family AT5G17490 56.2 1.4e-158 556.6
Cmu01g0606 . 42 578 GRAS Transcription Factor Family AT5G17490 57.3 1.5e-155 546.6
Cmu05g1241 . 28 555 GRAS Transcription Factor Family AT5G17490 52.9 1.6e-138 490.0
Cmu09g0932 . 1 570 GRAS Transcription Factor Family AT1G21450 57.2 2.7e-174 609.0
Cmu10g1269 . 168 544 GRAS Transcription Factor Family AT1G21450 52.6 4.9e-115 412.1
Cmu02g0941 . 168 523 GRAS Transcription Factor Family AT1G21450 52.9 1.7e-107 387.1
Cmu03g0756 . 322 696 GRAS Transcription Factor Family AT5G59450 56.7 1.8e-128 456.8
Cmu10g2833 . 369 753 GRAS Transcription Factor Family AT5G59450 54.9 9.4e-122 434.5
Cmu01g2083 . 1 548 GRAS Transcription Factor Family AT4G17230 58.4 3.4e-176 615.1
Cmu02g0941 . 1 519 GRAS Transcription Factor Family AT4G17230 50.2 2.2e-135 479.6
Cmu10g1269 . 60 544 GRAS Transcription Factor Family AT4G17230 52.0 8.4e-135 477.6
Cmu02g0941 . 134 518 GRAS Transcription Factor Family AT2G04890 65.6 1.1e-145 513.5
Cmu10g1269 . 166 544 GRAS Transcription Factor Family AT2G04890 62.0 1.2e-141 500.0
Cmu01g2083 . 169 548 GRAS Transcription Factor Family AT2G04890 58.2 2.8e-125 445.7
Cmu05g1543 . 2 112 GRAS Transcription Factor Family AT2G04890 63.1 3.7e-37 152.9
Cmu03g1906 . 1 471 GRAS Transcription Factor Family AT1G50420 66.9 9.6e-178 620.2
Cmu05g2138 . 41 461 GRAS Transcription Factor Family AT1G50420 60.2 4.3e-138 488.4
Cmu06g0299 . 377 742 GRAS Transcription Factor Family AT4G00150 59.7 1.2e-120 430.6
Cmu10g1111 . 413 776 GRAS Transcription Factor Family AT4G00150 55.4 2.8e-104 376.3
Cmu01g1880 . 1 600 GRAS Transcription Factor Family AT3G50650 50.4 1.4e-145 513.5
Cmu07g0917 . 9 553 GRAS Transcription Factor Family AT3G50650 52.7 3.5e-144 508.8
Cmu04g0555 . 237 837 GRAS Transcription Factor Family AT3G54220 64.1 4.7e-204 708.0
Cmu07g1077 . 73 441 GRAS Transcription Factor Family AT3G54220 64.2 2.7e-135 479.6
Cmu01g1703 . 105 494 GRAS Transcription Factor Family AT4G37650 67.9 6.0e-157 551.2
Cmu02g1264 . 106 496 GRAS Transcription Factor Family AT4G37650 56.6 3.0e-124 442.6
Cmu06g0100 . 60 455 GRAS Transcription Factor Family AT4G37650 50.5 1.7e-111 400.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008944 2 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 0 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5994 PF03514 GRAS 8.00E-127 CL0063 Cmu TF