Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0557 ATGGCAGAATTAGATCAAGAAGTAGTTGACCCTCCTCCCTTCTTTCTCTGTCCCATCTCTTTGCAAATCATGAAAGACCCCGTCACGATCACCTCCGGCATAACCTACGACCGAGAAAACATTGAGAAATGGTTGTTTTCCGACAAACACAAGACGTGCCCTGTCTCACAGGTTGTCTTGTCGGATTTCAACATCACTCCCAACCATACTTTAAGACGAGTTATTCAAGCTTGGTGCACAGTCAACGCTTGTAGTGGCGTCGAGAGGATGCCAACACCCAAACCTCCGGTTGACCGGAAACAAGTCGTTAGGATTCTTGCTGATGCCAAGTTATCTCCTTTCTCTCAGCAGAATTGTCTTCGTCGTCTTCGATCTATCGCTGCGGCGAATGAAACTAATAAACGTTGCATGGAATCGGCTGGAGCTGTGGAGTTCTTGGCTGGGCTTGTGTGTAGTTCTACAACCAACGTGGAGTCTGGCTTTGAAGATTACGCGTTTGACGACATGTCGGCAAACTTGGGGGATGAGGCTTTGAGCATTCTTCACAAACTCCAGATCTCCGAATCCGCTCTCAAATTTCTGCTCTCCAACAATGGCGGCATCTTCATCTCCACCTTAACCAAAATCTTGCAAAACCGAAGCTATTCCTCCCGAGCGTATTCAATAATGCTTCTCAATTCAATGTTCGAAGTCGCAGATCAGGTTCAAATCCTCAGTCTCACCGCCGATTTCTTCATCGAAATCGTCCAAATCCTTAAAGATCAGATCTCCAAACAAGCCTCGAAATCGGCATTGAAATTGCTAATCGGTGTCTGTTCGAGTTCCAGAAACAGAGTAAAGGCGGTTCAAGCCGGTGCGGTTCCGGTTCTGATCGATCTCCTTCTCGATCTCGATTCGTCGGAGAAGCGTTTGTGCGAGATGATTCTCGTGGTGCTTGATCTGCTGTGTGGTTGCGCCGATGGCAGGGCGGAGCTGTTGAATCACGCGGCGGGGATCGCCGTCGTGTCGAAGAAGATTTTGAGAGTTTCGTCGCTCGGAAGTGAGAAGGCGGTTGGGATCTTATGGTCCGTTGCGAGATTCTCGGCGAGCCAAACCGTCATTCAGGAAATGCTGCGGCTGGGAGTTGTGACGAAGCTTTGTTTTCTGCTTCAAGTGGTCGACGCCGGAGCGAAAGCGAAAGAGAAAGCTAAAGAGATTCTGAAGCTTCATGGTCGGCCATGGCGGAATTCTTCTTGTTTGCCTTCGAGTCTGCGATCATCTTATCCACAACATTAG 1275 48.78 MAELDQEVVDPPPFFLCPISLQIMKDPVTITSGITYDRENIEKWLFSDKHKTCPVSQVVLSDFNITPNHTLRRVIQAWCTVNACSGVERMPTPKPPVDRKQVVRILADAKLSPFSQQNCLRRLRSIAAANETNKRCMESAGAVEFLAGLVCSSTTNVESGFEDYAFDDMSANLGDEALSILHKLQISESALKFLLSNNGGIFISTLTKILQNRSYSSRAYSIMLLNSMFEVADQVQILSLTADFFIEIVQILKDQISKQASKSALKLLIGVCSSSRNRVKAVQAGAVPVLIDLLLDLDSSEKRLCEMILVVLDLLCGCADGRAELLNHAAGIAVVSKKILRVSSLGSEKAVGILWSVARFSASQTVIQEMLRLGVVTKLCFLLQVVDAGAKAKEKAKEILKLHGRPWRNSSCLPSSLRSSYPQH 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18983406 18985956 + CmPI595203_04g005570.1 Cmu04g0557 414142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0557 424 Pfam U-box domain 12 80 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu04g0557 424 PANTHER WDSAM1 PROTEIN 7 416 IPR045185 GO:0061630(InterPro)
Cmu04g0557 424 Gene3D - 99 406 IPR011989 -
Cmu04g0557 424 SMART Ubox_2 14 78 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu04g0557 424 ProSiteProfiles U-box domain profile. 10 85 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu04g0557 424 CDD RING-Ubox_PUB 12 63 IPR045210 -
Cmu04g0557 424 SUPERFAMILY RING/U-box 3 84 - -
Cmu04g0557 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 87 IPR013083 -
Cmu04g0557 424 SUPERFAMILY ARM repeat 103 389 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2228 Cmu-Chr2:35861198 Cmu04g0557 Cmu-Chr4:18983406 6.60E-95 dispersed
Cmu04g0557 Cmu-Chr4:18983406 Cmu05g0288 Cmu-Chr5:2430730 2.40E-55 dispersed
Cmu04g0557 Cmu-Chr4:18983406 Cmu10g2558 Cmu-Chr10:32371144 7.00E-116 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0557 - - - 0.0