Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0566 ATGTATTTTCTTTTGAAACAAAAGTGCTCCCTTGCCGATGAAGTACTCGTTGCTTTGCTGCTTCGATTTCTCTTCTTCCGGCGTCAATTTTTGGTGTTGATTCCGGCCAGTTACTGCTTCTTCTTGGTCGATTTCCAGAGATTAACCATGATTAATGCTATCAAGGCTGCGATCGGCGATGCCGTTCTCACTTCCATGTGGATTTTCTGTGCTTCGTCTCTTGGGGTTCTCACTTCCGTCCTGTCCTCGGCAGCCGGTGTTTATGGCCTTACGCTTCACCCGCTTCTTATCGTTACTACTCTTGTCTTCCTCCTTGTTTTCATTTTTAATATAATTGGTGCTGCTTTGGGTGGGGCTAGCTTTAATCCCACTGGTACTGCTGCTTTCTATGCTGCCGGCGTTGTTCCAACCTCTCTCTTCGCCATGGCTATCCGTTTCCCTGCTCAGGCAGCTGGTGCGGTTGCTGGTGCCCTGGCGATCAAGGAGGTGATGCCTATACAATACAAACACATGCTTGGTGGACCTTCTTTAAAAGTTGACATTCATTCTGGAGCTACAGCTGAAGGAATTTTGACCTTTATAATCAGTTTTGCTGTTCTTCTAATTGTAGTCAGGGGTCCTTCCAGCCCAATTATTAAAACATTGTTGCTGGCAATGACCACCGTAGCGTTAATTGTTGCTGGTTCTAGTTACACAGGACCTTCCATGAATCCTGCAAATGCGTTCGGATGGGCATATATAAACAACAGGCATGATACATGGGAGCAGTTGTACGTATACTGGATCGCCCCCTTCATAGGAGCGATTTTGGCTGCTTGGCTTTTCAGAATCATCTTCCCACCACCCCCCCCAGCCCCAGCCAAGCAGAAGAAAGCTTGA 879 47.1 MYFLLKQKCSLADEVLVALLLRFLFFRRQFLVLIPASYCFFLVDFQRLTMINAIKAAIGDAVLTSMWIFCASSLGVLTSVLSSAAGVYGLTLHPLLIVTTLVFLLVFIFNIIGAALGGASFNPTGTAAFYAAGVVPTSLFAMAIRFPAQAAGAVAGALAIKEVMPIQYKHMLGGPSLKVDIHSGATAEGILTFIISFAVLLIVVRGPSSPIIKTLLLAMTTVALIVAGSSYTGPSMNPANAFGWAYINNRHDTWEQLYVYWIAPFIGAILAAWLFRIIFPPPPPAPAKQKKA 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19089136 19094968 - CmPI595203_04g005660.1 Cmu04g0566 414151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0566 292 SUPERFAMILY Aquaporin-like 46 288 IPR023271 -
Cmu04g0566 292 Gene3D Glycerol uptake facilitator protein. 46 284 IPR023271 -
Cmu04g0566 292 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0566 292 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0566 292 PRINTS Major intrinsic protein family signature 141 160 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0566 292 PRINTS Major intrinsic protein family signature 102 126 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0566 292 PRINTS Major intrinsic protein family signature 218 240 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0566 292 PRINTS Major intrinsic protein family signature 258 278 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0566 292 FunFam Aquaporin SIP1-1 51 291 - -
Cmu04g0566 292 Pfam Major intrinsic protein 49 275 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0566 292 PANTHER AQUAPORIN SIP1-1 50 291 IPR044222 GO:0015250(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0566 Cmu-Chr4:19089136 Cmu04g0933 Cmu-Chr4:23782880 1.90E-11 dispersed
Cmu04g0566 Cmu-Chr4:19089136 Cmu02g2107 Cmu-Chr2:34686464 2.10E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0566 K09875 - csv:101220534 399.053