Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0623 ATGGCTTCAAGACAAGTTCTTCCCCAACAAATCAGAGGCGAGGCAGCGATCGGTGGAGGAAAACAGGCAAAGGGCGCAGCGGCGGCAGATGCTAGGAACCGCCGAGCATTGGGTGATATTGGGAATCTGGTAACTGTTCGAGGAGTTGACGCAAAGGCAAATCGTCCTATTACAAGGAGTTTCTGTGCTCAGTTGCTTGCTAATGCCCAAGCTGCTGCAAAAGCTGAAAACAATAAGAAACAAGTACCTGTTAATGTAGATGGGGCTGCTCCCATTCTTGATGCTGGTGTTATGGCTGTTAAGAAAGCAGGAGCTCCCAAGCCAGCGCATAAGAAAGTTGCAATTAAACCGACATCGGAGGTTATCGAGATAAGCTCGGACACGGTCGAAAAAGTTAAAGCCAAGGAAGTCAAATGTGCAAACAAGAAAAAGGAAGGAGAAGGGCCCTCAAAGAAGAAAGCACAGACTCTCACTTCAGTCCTAACTGCTAGAAGCAAGGCTGCCTGTGGTGTATCCAAGAAACCTAAAGAGGAGATTTTTGATATTGATGCTGCAGATGTTGGTAATGAGTTGGCAGCAGTTGAATATGTTGAGGACATTTACACTTTCTATAAAGAAGCCGAGAATGAGAGCAGACCTCATGACTATATGGATTCACAACCTGAGATAAACTCGACCATGAGGGCTATTTTGGTGGATTGGTTGGTTGATGTCCACAACAAATTCGAACTTTCGCCCGAAACTTTCTACCTCACGATCAATATAATCGATCGATTCCTTGCGACAAAAATAGTTCCAAGAAGGGAATTGCAATTGGTGGGCATTGGAGCCATGCTTATAGCCTCCAAATATGAAGAAATTTGGGCGCCTGAGGTAAATGACTTTGTGTGTCTTTCGGATAGAGCTTACACTCATGAACAGATACTAGTGATGGAGAAAAAAATACTTGGCAAGTTGGAATGGACCTTGACTGTTCCTACACCCTACGTTTTCCTTGCTCGATTCATCAAGGCGTCCAAGGACTCCAATCACGAGATGGAAAATCTGGTTTATTTTCTGGCTGAACTTGGTATAATGCATTACAATACGGCAATGATGTATTGCCCGTCCATGATTGCCGCCTCGGCAGTCTATGCGGCTCGATGCACGCTGAAGAAAACCCCTGCTTGGGATGACACCCTCAAACTGCACACTGGTTTCTCAGAACCTCAGATAATTGACTGTGCAAAACTTCTGGTGGGGTTCCATGGGGTAGCAGAGAAGAACAAGCTTCAAGTAATATACCGAAAGTACTCGAGCTCCGAGCGGGGAGCGGTAGCATTGCTTCAGCCAGCCAAAGCTCTGTTGGCTCCCAATGGTGGTGGTGTCCATTGA 1374 46.07 MASRQVLPQQIRGEAAIGGGKQAKGAAAADARNRRALGDIGNLVTVRGVDAKANRPITRSFCAQLLANAQAAAKAENNKKQVPVNVDGAAPILDAGVMAVKKAGAPKPAHKKVAIKPTSEVIEISSDTVEKVKAKEVKCANKKKEGEGPSKKKAQTLTSVLTARSKAACGVSKKPKEEIFDIDAADVGNELAAVEYVEDIYTFYKEAENESRPHDYMDSQPEINSTMRAILVDWLVDVHNKFELSPETFYLTINIIDRFLATKIVPRRELQLVGIGAMLIASKYEEIWAPEVNDFVCLSDRAYTHEQILVMEKKILGKLEWTLTVPTPYVFLARFIKASKDSNHEMENLVYFLAELGIMHYNTAMMYCPSMIAASAVYAARCTLKKTPAWDDTLKLHTGFSEPQIIDCAKLLVGFHGVAEKNKLQVIYRKYSSSERGAVALLQPAKALLAPNGGGVH 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19952342 19954619 + CmPI595203_04g006230.1 Cmu04g0623 414208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0623 457 PIRSF Cyclin_A_B_D_E 1 454 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cmu04g0623 457 SMART cyclin_7 233 317 IPR013763 -
Cmu04g0623 457 SMART cyclin_7 330 414 IPR013763 -
Cmu04g0623 457 FunFam G2/mitotic-specific cyclin-1 314 440 - -
Cmu04g0623 457 Gene3D - 199 440 - -
Cmu04g0623 457 SUPERFAMILY Cyclin-like 188 323 IPR036915 -
Cmu04g0623 457 Pfam Cyclin, C-terminal domain 326 444 IPR004367 -
Cmu04g0623 457 CDD CYCLIN_AtCycB-like_rpt1 176 321 - -
Cmu04g0623 457 Pfam Cyclin, N-terminal domain 199 323 IPR006671 -
Cmu04g0623 457 SUPERFAMILY Cyclin-like 327 447 IPR036915 -
Cmu04g0623 457 Gene3D - 213 324 - -
Cmu04g0623 457 ProSitePatterns Cyclins signature. 228 259 IPR048258 -
Cmu04g0623 457 PANTHER CYCLINS 175 432 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cmu04g0623 457 SMART Cyclin_C_2 326 445 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2241 Cmu-Chr2:36047677 Cmu04g0623 Cmu-Chr4:19952342 8.30E-111 dispersed
Cmu04g0623 Cmu-Chr4:19952342 Cmu11g1856 Cmu-Chr11:30695713 2.00E-68 dispersed
Cmu04g0623 Cmu-Chr4:19952342 Cmu05g1751 Cmu-Chr5:27610905 1.90E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0623 K21777 - csv:101217210 751.895