Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0666 ATGGCAAGCAACAATGAAAAAGGTTCTGAAAGACGACAACAGTCAACGATCGGATTTTCTTATCTGGGTTGTTGCCATGTCGTGATTTTTCTTTATCTGAGGTTCTCCACGGAGTCTCGTTTGCGGAGAAGGGTTAGGCCATTCAGCCGAATGGAAGGGTCTGGTAGCGACCCCGACTCTCATAGAGCTGCTTCCACCAGTAGTAGTTCAAGAAGGTTTGGAATGTTATCTGCCTCGAATATTATTCAGGCTCCGCTTTCTGCGCTGTTAGAGTATTCGGGTCTTCTTCGCGGCCGCCCAAGTCATCAAGAATCTGAGGCATTGATAAGTGCGCGACTGCCTTCGGGGTTTCGAGACCATCTTCGCAGCCAGATTGAAGAATCTTCGGGTGCCACTAATGATGGAGAGGTTTCGATTAGGATAATTGGGGCAGGGGAACCAGAACATGGTAGGGATGGTGCTGGACTAGTAGTTGGGCAAGCAAGGGAAGTTAGTGGTCAGAATGCGGTGTCTTTGCAATCTGTTTCGGGGTTGGCATCTGTGACCTTGGGGTCGGATCTTAGCCAGGGCAATTCTGCTACTGAACGCGGTGCAAGAGAGGGCATTCCTCAATCGATAAATGGAAATGCTGATGGAGATGCCTCGGAGGCGGCTGGGGGAAATAGCAGGGATTCTTCTTATCAGAGGTATGATATTCAACAGGCTGCTCGGGGGATTGAGCAGATTCTCCCATTTAGTTTCCTTCTACTGGTGGTCTTCATTCGACAGCATTTGCAAGGTTTCTTTGTGACAATATGGATTGCTGCTTTCATGTACAAGTCAAATGATATTTTGCGAAAACAAACAGCTTTGAAGGGGGAGAGAAAAATCTCTGTTTTGGTTGGCATTTCTCTTGCATTCACTATTCATGTTATTGGTGTGTACTGGTGGTATCAGAATGATGACCTTTTATATCCATTGATCATGCTTCCCCCAAGAGCGATTCCTCCTTTTTGGCATGCTATTTTCATCATCATGGTGAATGACACTTTGGTCCGTCAGGCAGTGATGGTGATCAAGTGTGTTCTATTGATGTATTACAAGAACAGCAGAGGCCGCAATTATCGTAAACAGGGTCAAATGTTAACTTTAGTCGAATATTTGCTGCTACTGTACCGTGCCTTATTGCCTACTCCCGTTTGGTATCGTTTCTTTTTGAACAAAGAGTACGGGAGCCTATTTTCGTCACTATTGACAGGACTGTACTTAACTTTCAAACTCACCTCTGTTGTCGAAAAGGTGCAATCCTTCTTTGCTGCTTTGAAAGCACTGTCACGTAAAGAGGTGCATTATGGGGCATATGCAACGTCAGAGCAGGTCAGCGCAGCTGGTGATTTGTGTGCTATTTGCCAAGAGAAGATGCATGCTCCTATCCTACTCCGATGTAAACACATATTTTGTGAAGATTGTGTATCAGAGTGGTTCGAGCGGGAACGAACGTGCCCATTGTGTAGGGCTTTGGTTAAACCCGCGGATCTCAGGTCATTTGGCGATGGATCAACAACTGCTACTTTGGAGGAAGCAAAGGCTGGCGCTCGTGAACTCGGAAAGGGGAATTCGAAATCGACATGTATACATAAATAG 1623 46.03 MASNNEKGSERRQQSTIGFSYLGCCHVVIFLYLRFSTESRLRRRVRPFSRMEGSGSDPDSHRAASTSSSSRRFGMLSASNIIQAPLSALLEYSGLLRGRPSHQESEALISARLPSGFRDHLRSQIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAREVSGQNAVSLQSVSGLASVTLGSDLSQGNSATERGAREGIPQSINGNADGDASEAAGGNSRDSSYQRYDIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKISVLVGISLAFTIHVIGVYWWYQNDDLLYPLIMLPPRAIPPFWHAIFIIMVNDTLVRQAVMVIKCVLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRKEVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTTATLEEAKAGARELGKGNSKSTCIHK 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20654113 20665693 - CmPI595203_04g006660.1 Cmu04g0666 414251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0666 540 ProSitePatterns Zinc finger RING-type signature. 475 484 IPR017907 -
Cmu04g0666 540 CDD RING-HC_RNFT1-like 458 498 - -
Cmu04g0666 540 MobiDBLite consensus disorder prediction 187 225 - -
Cmu04g0666 540 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 57 517 IPR044235 GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:1904294(InterPro)
Cmu04g0666 540 MobiDBLite consensus disorder prediction 49 71 - -
Cmu04g0666 540 Pfam Ring finger domain 459 498 IPR001841 -
Cmu04g0666 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 435 508 IPR013083 -
Cmu04g0666 540 SMART ring_2 460 497 IPR001841 -
Cmu04g0666 540 ProSiteProfiles Zinc finger RING-type profile. 460 498 IPR001841 -
Cmu04g0666 540 SUPERFAMILY RING/U-box 455 503 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0666 Cmu-Chr4:20654113 Cmu07g0585 Cmu-Chr7:7336302 6.30E-154 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0666 - - - 0.0