Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0675 ATGAGGCTACAATCCCTTTTTGCAGCATCATCTTTACTCTTACTCATATATTTTCTCTCCTTCATTGCGGCTGATCTAAACTCAGACCGGCAAGCTCTTCTGGAGTTTATTTCAACAGTTCCCCATGGTCGGAAAATTAACTGGGATCCATCTACCCCTGTCTGCACTACATGGGTTGGCGTCACTTGTACTTCAGACCTCTCTAATGTGCTTGCTCTCAGGCTGCCTGCTGTTGGACTGTATGGTCCGATCCCGGCCAATACACTTGGAAAGTTAGATGCCCTTAGAACTTTGAGTCTTCGATCTAATAATCTTAATGGAAATCTTCCATCAGATGTGCTATCCCTTCCCTCCCTAAAGTTTATATATCTTCAACACAATAACTTTTCTGGTAAAATACCTTCTTCCCTGTCGCCTAGCCTTACCTTCCTTGATCTGTCCTTCAACTCTCTCACTGGAAACATTCCGAAATCAATACAAAATTTAACGCACCTCACTGGCCTAAACGTCCAAAACAACTCCCTGATTGGATCCATTCCTGATATAGGTCACCTAAAGCTTAAGCAATTGAACTTGAGCTACAACCATCTCAGCGGTCCCATTCCTGCTTCACTGCAATCATTTCCTACTTCTTCCTTTGAAGGGAACTCACTGCTATGTGGCTCGCCACTTAAAAATTGCTCAGTTGGTGCCCCCTTACCTTCTCCATCTCCTGTTTCTTTGCCCCCACCAAAGAAAAAGAGCAAAAAGAAAATAAATATTGGAGCTATTGTTGCCATCGCCCTAGGTGGTGCTGCCGTGCTCTTCCTCCTCATGTTATTGATTGTTGTCTGCTGTATGAAGCGAAAAGATGGTGAAGGTAGTGCTGCTGCTGTGAAAGGAAAGGGTAAAAGGACTGAGCAACCGAAGGAGGATTTCGGAAGCGGGGTACAAGAGCCTGAGAAAAACAGGCTGGTTTTCTTTGAAGGCTGTTCTTATAATTTTGATCTTGAGGACTTGTTAAGGGCGTCTGCTGAAGTGCTCGGAAAAGGGAGTTATGGAACTACTTACAAGGCAATCTTGGAGGAAGGAGTAACAGTGGTAGTAAAGAGGTTGAAGGAAGTGGTGGCTGGGAAAAAGGAATTTGATCAACAAATGGAGATTGTTGGGAGGATGGGCCAGCATCCAAACGTCGTGCCTCTCCGTGCCTATTACTATTCAAAAGATGAGAAGCTTTTGGTTTACGACTATGCCGTTGCTGGAAGCTTTTCAGCATTACTCCGTGGAAGCCGAGAAGGTGGACGAGCGCCACCGGACTGGGAAACAAGATTGAAGGTTTCCTTGGGGTGTGCCAAAGGGCTTGCACATATCCATTCAGCAAGTGGGGGGAAATTCATCCATGGCAACATAAAGTCCTCTAACATCCTTCTCACACAAGACCTGAATGGTTGCATTTCAGATTTTGGCCTGACTCCTTTGATGAACTCCCCTGCCATTCCCTCTAGAAGTGTAGGTTATCGTGCTCCAGAGGTGATCGAGACTCGAAAATCAACTCAAAAGTCAGATGTTTACAGTTTTGGAGTTGTTTTGCTAGAGATGTTGACTGGGAAAGCACCATCCCAATCGCCCGGCCGCGACGATGTTATGGACCTTCCGAGATGGGTCCAGTCTGTGGTAAGAGAGGAATGGACATCTGAGGTGTTTGATGTAGAGCTAATGAAGTATCAGAACATTGAAGAAGAGCTTGTTCAAATGCTCCAAATAGCAATGGCTTGCGTGTCTCGAGTGCCAGATATGAGACCAACGATGGAAGAAGTAGTTAGGATGATCGAGGAAATCCGACAATTAGACTCAGGAACTCGACCATCATCAGAAGATAACAAAGCTGGGGACGGGGACGATGACTTGAATACTCAGACCTTGGTTGAGACAAAGGTGGTGATGAATAATAAATTATTCAACACGATCTCAACTCCCTTCATCAACTACCAAATGTATAGAGTGAGCATATGGATTATAAATCTTCGTGCTATTTTCCACCACACTTTATCTCCTTGCTACCTCTCATTTAACCTTAAAGGCGATTGGCAAAGTTCTTCGGTCTCTAAAATTGTCAAATTCCACAAAAATTCAGAGGGTAAAGAGACCGACGAACAGGCAGCGATCATGGCTTCGAAGCGTATCTTGAAGGAACTCAAGGATTTACAGAAGGATCCACCCACATCTTGCAGTGCTGGCCCTGTAGCTGAAGATATGTTCCATTGGCAAGCGACCATTATGGGACCATCTGATAGTCCTTATTCAGGAGGTGTTTTTCTTGTCAATATTCATTTTCCTCCAGATTATCCTTTCAAGCCCCCCAAGGTTGCTTTTAGGACCAAAGTGTTTCACCCAAATATCAATAGCAATGGAAGCATTTGTCTTGACATCCTTAAAGAACAGTGGAGCCCTGCGCTTACGATTTCCAAGCTAGTTTTGTCATGTTTGAGATCTATATGCTTCTGCCATAGTAAAGTTCTGTGTAGCATGGATGCTTACTTGATCGAAGTACCCTATTTGATGGAGAATCTTACAACACTCGATCTGATTATTTCTTTGAGCCATGGTTTCCCTATGCAATTAGGAGTTCTATTTTCTGTGAAGAATTTGGGTCTCGGGCCCAACTCCTTGCATTATACTTATGGCCCACACCCTACTAATCCCAGGATGGGAAGCCATTCCACGGGGAACTTGCATGCTCATCAACTTTTTGTTGATTTATGTTCTAGAAATGTTAAGGTACTGCTTTCCATATGCTCATTGCTGACTGATCCAAACCCAGACGACCCTCTTGTACCAGAGATCGCGCACATGTACAAGACCGACCGAACCAAATATGAAGCGAGTGCACGGAGCTGGACTCAGAAGTATGCGATGGGTTGA 2901 44.47 MRLQSLFAASSLLLLIYFLSFIAADLNSDRQALLEFISTVPHGRKINWDPSTPVCTTWVGVTCTSDLSNVLALRLPAVGLYGPIPANTLGKLDALRTLSLRSNNLNGNLPSDVLSLPSLKFIYLQHNNFSGKIPSSLSPSLTFLDLSFNSLTGNIPKSIQNLTHLTGLNVQNNSLIGSIPDIGHLKLKQLNLSYNHLSGPIPASLQSFPTSSFEGNSLLCGSPLKNCSVGAPLPSPSPVSLPPPKKKSKKKINIGAIVAIALGGAAVLFLLMLLIVVCCMKRKDGEGSAAAVKGKGKRTEQPKEDFGSGVQEPEKNRLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTTYKAILEEGVTVVVKRLKEVVAGKKEFDQQMEIVGRMGQHPNVVPLRAYYYSKDEKLLVYDYAVAGSFSALLRGSREGGRAPPDWETRLKVSLGCAKGLAHIHSASGGKFIHGNIKSSNILLTQDLNGCISDFGLTPLMNSPAIPSRSVGYRAPEVIETRKSTQKSDVYSFGVVLLEMLTGKAPSQSPGRDDVMDLPRWVQSVVREEWTSEVFDVELMKYQNIEEELVQMLQIAMACVSRVPDMRPTMEEVVRMIEEIRQLDSGTRPSSEDNKAGDGDDDLNTQTLVETKVVMNNKLFNTISTPFINYQMYRVSIWIINLRAIFHHTLSPCYLSFNLKGDWQSSSVSKIVKFHKNSEGKETDEQAAIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKLVLSCLRSICFCHSKVLCSMDAYLIEVPYLMENLTTLDLIISLSHGFPMQLGVLFSVKNLGLGPNSLHYTYGPHPTNPRMGSHSTGNLHAHQLFVDLCSRNVKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRTKYEASARSWTQKYAMG 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20856366 20862768 + CmPI595203_04g006750.1 Cmu04g0675 414260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0675 966 MobiDBLite consensus disorder prediction 289 310 - -
Cmu04g0675 966 Gene3D Ubiquitin Conjugating Enzyme 914 966 IPR016135 -
Cmu04g0675 966 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 716 862 IPR000608 -
Cmu04g0675 966 SUPERFAMILY Protein kinase-like (PK-like) 339 604 IPR011009 -
Cmu04g0675 966 SUPERFAMILY UBC-like 706 822 IPR016135 -
Cmu04g0675 966 FunFam Probable inactive receptor kinase RLK902 26 182 - -
Cmu04g0675 966 Pfam Ubiquitin-conjugating enzyme 720 822 IPR000608 -
Cmu04g0675 966 Pfam Ubiquitin-conjugating enzyme 919 959 IPR000608 -
Cmu04g0675 966 Gene3D Transferase(Phosphotransferase) domain 1 413 627 - -
Cmu04g0675 966 CDD UBCc 718 960 IPR000608 -
Cmu04g0675 966 SMART ubc_7 719 965 - -
Cmu04g0675 966 MobiDBLite consensus disorder prediction 610 626 - -
Cmu04g0675 966 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Cmu04g0675 966 FunFam pollen receptor-like kinase 1 303 410 - -
Cmu04g0675 966 Gene3D Phosphorylase Kinase; domain 1 303 410 - -
Cmu04g0675 966 CDD STKc_IRAK 341 606 - -
Cmu04g0675 966 FunFam Ubiquitin-conjugating enzyme E2 8 716 835 - -
Cmu04g0675 966 ProSiteProfiles Protein kinase domain profile. 335 606 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g0675 966 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 789 804 IPR023313 -
Cmu04g0675 966 Gene3D Ubiquitin Conjugating Enzyme 681 833 IPR016135 -
Cmu04g0675 966 PANTHER OS05G0588300 PROTEIN 12 618 IPR050994 -
Cmu04g0675 966 MobiDBLite consensus disorder prediction 610 629 - -
Cmu04g0675 966 Pfam Protein kinase domain 339 601 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g0675 966 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 411 617 - -
Cmu04g0675 966 SUPERFAMILY UBC-like 918 965 IPR016135 -
Cmu04g0675 966 Gene3D Ribonuclease Inhibitor 187 227 IPR032675 -
Cmu04g0675 966 ProSitePatterns Protein kinases ATP-binding region signature. 341 372 IPR017441 GO:0005524(InterPro)
Cmu04g0675 966 Pfam Leucine Rich Repeat 118 138 IPR001611 GO:0005515(InterPro)
Cmu04g0675 966 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515(InterPro)
Cmu04g0675 966 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Cmu04g0675 966 SUPERFAMILY L domain-like 39 225 - -
Cmu04g0675 966 Gene3D Ribonuclease Inhibitor 26 182 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1894 Cmu-Chr2:32858409 Cmu04g0675 Cmu-Chr4:20856366 3.80E-182 dispersed
Cmu04g0675 Cmu-Chr4:20856366 Cmu11g0257 Cmu-Chr11:3111452 7.40E-137 dispersed
Cmu07g0621 Cmu-Chr7:8713310 Cmu04g0675 Cmu-Chr4:20856366 1.70E-35 dispersed
Cmu04g0675 Cmu-Chr4:20856366 Cmu01g0201 Cmu-Chr1:1971034 3.00E-199 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75455 PF00069 Pkinase 1.70E-37 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0675 - - - 0.0