Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0678 ATGAAGGAAATTCATAAATCCCGTCTTGCATTTGCATTTGCTTCTATCTCTGTTTTCGTTTGCTTGTTCTTCGATGTCCATGTGGTTTTAGCAGACAATTACATCCCTCGGGATTTCATCCTCCTTGATTGTGGAGGGCCTTCAACTGCTAACGACATCGATGGCCGGAAATGGTATACCGATGACAAATCTAAGTTTGTTCCGGCGACAGGGAATAGCATCGTATCGAAAGCCGCTACTCAGGATCCTTCAGTTCCTGATATCCCTTTCATGACGGCTAGGGTTTTCAGCTCTAATTTCACCTACAGCTTTCCTGTGGCTCCTAGTCGTTTATTCGTTCGTCTCTACTTTTATCCTTCTTCTTATGGTGGACTTAATGCATCTGATGCTCTTTTCTCTGTTTCCACTCCGTCCTATACTCTTCTTAAGAACTTCAGCGCTTCACAAACTGCTGAGGCTTTGAATTATGCCTATATCATTAAGGAATACTCTATCCATGTTGATGGTGATAGGTTAAACTTGACTTTCATTCCATCCTCCAGTCATCCAAAGGCTTATGCATTTGTGAACGGGATTGAGATTGTATCTATGGCTGATATTTACAGTGATACTTCTGGGAGTACTCTGATTGTTGGCCCATCTACTCCATTCACTGTGGACAATGCCACTGCGCTTGAGAATGTTTATCGGTTGAATGTCGGGGGGAATGATATTTCACCTTCTGGTGATACGGGGATGTATAGGTCTTGGTTTGATGACACTCCATACTTGTATGGTGCAGCACAGGGAGTGACGATGAGTACTGATCAGAACACAACGCTTAATTATCTGCCGAATATTCCTACTTATGTTGCGCCGGAAAATGTCTACTCCACTGCTAGAGCAATGGGACCTGATAACAATGTCAATCTGAATTATAACTTGACATGGATTTTCCCTGTTGACACTGGGTTCTTTTATCTTGTTAGGCTCCATTTTTGTGAGGTTGCTGCAAATATCACAAAAATTAACCAAAGAGTTTTCGACATTTTCCTCTTTAATCAAACTGCTATGCAGGGTGCTGACGTGATTGCCTGGGCTGGAAGTAATGATACTCCTGTGTACAAAGATTATGTGGTTTTCGTTCCTGCTAATGGAAGTCCGCAGCAGGATTTATGGCTCGAACTCCATCCAGACAAGTCCATGGTCCCCAATTACTATGATGCAATCTTGAATGGTGTGGAGATATTCAAAATTAATGACTCGAGCGCTAATCTTGCTGGGCCAAATCCTATTCCTGCGCCAGTACAGAAAATTATTGATCCATCATTAGCTAAGCCAGCATCTTCTCATGGTAAATCAAAGAAGTCAGGGGTGATTGCTGGAGTTGTTTGTGGAGCAGTTGTTTTAGCTCTGATCATTGGTTTCTTTGTTGTTGCTAAACGTCGCCGTGGGCATGGGAAAGATTCAAGTACTGTTGAAGGACCGTCAGGATGGCTACCTCTTTCTCTCTATGGAAATTCCCATTCGGCTGGATCTGCTAAGACAAATACAACTGGAAGCTATACATCCTCCCTGCCTTCCAATCTTTGCCGCCACTTCTCGTTTTCTGAGATCAAGGCTGCCACAAGGGACTTTGATGAATCTTTACTACTTGGAGTTGGTGGTTTTGGCAAAGTTTACAAGGGAGAAATTGATGGTGGGACTACAAAAGTTGCCATCAAGCGAGGGAACCCTCTTTCCGAGCAAGGTGTGCATGAATTTCAAACTGAGATTGAAATGCTCTCTAAGCTTCGCCATCGCCACCTTGTTTCATTGATTGGCTACTGTGAAGAGAATTGTGAAATGATCCTGGTTTATGATTACATGGCTCATGGAACACTGCGAGAACATCTATACAAGACTCACAAGCCACCGTTGTCTTGGAGGCAAAGGCTCGAGATATGCATTGGAGCTGCCCGTGGTCTGCATTATCTCCACACTGGTGCCAAGTATACGATTATTCATCGAGATGTGAAGACAACCAACATCCTTTTGGACGAAAAGTGGGTAGCAAAAGTATCTGATTTCGGGTTGTCGAAAACTGGTCCTACTTTGGATCACACACATGTTAGCACTGTTGTGAAAGGTAGTTTTGGATACTTGGATCCTGAATACTTTAGGCGACAGCAATTGACCGACAAATCAGATGTTTACTCCTTCGGAGTCGTTCTCTTTGAAGTCCTATGTGCTCGGCCAGCCTTGAACCCAACACTCCCCAAGGAGCAAGTGAGTTTAGCCGAATGGGCTGCACACTGCTACAACAAAGGCATTTTAGATCAGATAATCGACACATTCCTAAAGGGGAAGATCGCATCGGAGTGTCTCAAGAAGTTCGCCGAGACAGCAATGAAATGTGTGTCTGATCAGGGCATCGACAGGCCATCAATGGGCGATGTTCTCTGGAATCTAGAGTTTGCATTGCAGCTGCAGGAGAGCGCAGAAGAGAGTGGCAAGGTAGGCAGTGGGATAGAAGTGGAAGGAGGTCAGCTCGACGTAGTTTACAAAGGGAAGAAGGATCCAGACGCTTCCCCTGGCATCGATGGAAACATAACCGACTCAAGAAGCACCGGAATCAGTATGAGCATTGGAAGCCGGAGTCTTGCCAGTGAAGATTCGGACGGGTTGACGCCAAGTGCCGTCTTCTCACAGATTATGAACCCAAAAGGTCGTTAA 2694 44.65 MKEIHKSRLAFAFASISVFVCLFFDVHVVLADNYIPRDFILLDCGGPSTANDIDGRKWYTDDKSKFVPATGNSIVSKAATQDPSVPDIPFMTARVFSSNFTYSFPVAPSRLFVRLYFYPSSYGGLNASDALFSVSTPSYTLLKNFSASQTAEALNYAYIIKEYSIHVDGDRLNLTFIPSSSHPKAYAFVNGIEIVSMADIYSDTSGSTLIVGPSTPFTVDNATALENVYRLNVGGNDISPSGDTGMYRSWFDDTPYLYGAAQGVTMSTDQNTTLNYLPNIPTYVAPENVYSTARAMGPDNNVNLNYNLTWIFPVDTGFFYLVRLHFCEVAANITKINQRVFDIFLFNQTAMQGADVIAWAGSNDTPVYKDYVVFVPANGSPQQDLWLELHPDKSMVPNYYDAILNGVEIFKINDSSANLAGPNPIPAPVQKIIDPSLAKPASSHGKSKKSGVIAGVVCGAVVLALIIGFFVVAKRRRGHGKDSSTVEGPSGWLPLSLYGNSHSAGSAKTNTTGSYTSSLPSNLCRHFSFSEIKAATRDFDESLLLGVGGFGKVYKGEIDGGTTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENCEMILVYDYMAHGTLREHLYKTHKPPLSWRQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDHTHVSTVVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPALNPTLPKEQVSLAEWAAHCYNKGILDQIIDTFLKGKIASECLKKFAETAMKCVSDQGIDRPSMGDVLWNLEFALQLQESAEESGKVGSGIEVEGGQLDVVYKGKKDPDASPGIDGNITDSRSTGISMSIGSRSLASEDSDGLTPSAVFSQIMNPKGR 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20888500 20891193 - CmPI595203_04g006780.1 Cmu04g0678 414263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0678 897 ProSiteProfiles Protein kinase domain profile. 539 813 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g0678 897 FunFam FERONIA receptor-like kinase 223 413 - -
Cmu04g0678 897 Gene3D Transferase(Phosphotransferase) domain 1 616 829 - -
Cmu04g0678 897 MobiDBLite consensus disorder prediction 843 897 - -
Cmu04g0678 897 FunFam FERONIA receptor-like kinase 39 198 - -
Cmu04g0678 897 Pfam Protein tyrosine and serine/threonine kinase 545 807 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu04g0678 897 Gene3D Phosphorylase Kinase; domain 1 524 615 - -
Cmu04g0678 897 ProSitePatterns Serine/Threonine protein kinases active-site signature. 660 672 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu04g0678 897 ProSitePatterns Protein kinases ATP-binding region signature. 545 568 IPR017441 GO:0005524(InterPro)
Cmu04g0678 897 SUPERFAMILY Protein kinase-like (PK-like) 512 812 IPR011009 -
Cmu04g0678 897 Pfam Malectin-like domain 42 412 IPR024788 -
Cmu04g0678 897 CDD STKc_IRAK 545 811 - -
Cmu04g0678 897 PANTHER OS03G0124300 PROTEIN-RELATED 16 477 IPR045272 GO:0004714(InterPro)|GO:0006468(InterPro)
Cmu04g0678 897 FunFam Receptor-like protein kinase FERONIA 616 826 - -
Cmu04g0678 897 MobiDBLite consensus disorder prediction 855 890 - -
Cmu04g0678 897 SMART serkin_6 539 813 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g0678 897 Gene3D - 39 198 - -
Cmu04g0678 897 Gene3D - 224 413 - -
Cmu04g0678 897 FunFam Receptor-like protein kinase FERONIA 511 615 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2002 Cmu-Chr1:33237593 Cmu04g0678 Cmu-Chr4:20888500 8.50E-64 dispersed
Cmu04g0678 Cmu-Chr4:20888500 Cmu07g1567 Cmu-Chr7:30858651 4.60E-218 dispersed
Cmu11g0697 Cmu-Chr11:7803104 Cmu04g0678 Cmu-Chr4:20888500 9.90E-42 dispersed
Cmu11g1150 Cmu-Chr11:21749267 Cmu04g0678 Cmu-Chr4:20888500 8.50E-49 dispersed
Cmu04g0671 Cmu-Chr4:20742044 Cmu04g0678 Cmu-Chr4:20888500 1.40E-64 proximal
Cmu02g1669 Cmu-Chr2:30516638 Cmu04g0678 Cmu-Chr4:20888500 7.70E-239 transposed
Cmu10g2987 Cmu-Chr10:36037587 Cmu04g0678 Cmu-Chr4:20888500 1.60E-61 wgd
Cmu03g0626 Cmu-Chr3:507001 Cmu04g0678 Cmu-Chr4:20888500 1.30E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75456 PF12819 Malectin_like 4.80E-40 CL0202 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0678 - - - 0.0