Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0696 ATGGAGAACAAAGGGGCTATCTTGATGGAACGTTATGAATTAGGAAGGCTGCTGGGGCAGGGGACCTTTGCCAAGGTTTACTATGCTAGAGACATTAAAACTGGCATGAGCGTGGCTATCAAAGTTATTGACAAAGAGAAGATCTTGAAGGTTGGAATGATTGATCAAATCAAGAGGGAGATCTCTGTCATGAGATTAGTTAAGCATCCCAACATCGTTGAGCTTTATGAGGTTATGGCAAGTAAAACTAAAATTTACTTTGTCATGGAATATGTCAAGGGTGGTGAGCTATTCAATAAGGTATCCAAAGGAAAGCTTAAAGAATCTGTTGCACGGAAATATTTTTGGCAGCTGATCAGTGCTGTTGATTATTGCCACAGTAGAGGGGTATGCCATCGGGATTTGAAGCCTGAAAATTTATTATTGGATGAACATGGTAATCTGAAGGTTTCTGATTTTGGGTTGAGTGCTCTTGCTGAATCTAAACGCCAAGATGGATTACTCCATACTACGTGCGGAACACCTGCTTATGTAGCTCCAGAAGTCATTAACAGGAGAGGTTACGATGGATGCAAAGCTGATATTTGGTCTTGTGGAGTGATTTTATTTGTTCTATTGGCCGGTTATCTCCCATTCAATGATCCTAATCTAATGGAGATGTATAAGAAGATTGGAAAAGGAGAATTTAAATTCCCCAACTGGTTTGCACCAGATGTGCGCAAGCTGTTGTCAAAGATTTTGGATCCTAACCCAAATACCAGGATATCTATTGCCAAAATAATGGCAAGTTCTTGGTTGAGGAGGGAGTTCAATGTGAAATCACAAATTAATGCAGAGGAAGTGAAAGAATTGGCTCCTTTGGACGTTGATGCAGTTTTTGTGTCTACAGCTGAGGACAGAGACTCCATTAGAAGAGAGCAGAAGCAAGAAATGGAAAAGCCATTGAATTTGAATGCTTTCGACATAATCTCCTTGTCATCAGGTTTTGATTTGTCAGGATTATTCGAGGAGACTGATCTAAAGAAAGAAGTGAGATTCACATCAAACAAGCCTGCTTCCACGATCATCTCAAAACTGCAAGACATTGCAAAGGGCCTGAAATTGAAAATCAAGAAGAAAGACAGAGGCCTACTGAAGATTGAAGGGTGTAAGGAAGGTCGAAAAGGAGCCGTATGTATTGACGCAGAGATTTTTGAGGTTACCCCATCATTCCATATTGTGGAAATGAAAAAGTCAAACGGAGATACTTTGGAATATCGGAAGATAATGAAAGATGATATTAGACCTGCTCTGAAGGACATTGTCTGGACCTGGCAAGGCGAACAGCATCAGAGACGGCTCTTACAAGTAGAACAACAAGGACAAGAAGCTCAGCAACAGTCTTCTACTGATTCATTATAA 1401 40.47 MENKGAILMERYELGRLLGQGTFAKVYYARDIKTGMSVAIKVIDKEKILKVGMIDQIKREISVMRLVKHPNIVELYEVMASKTKIYFVMEYVKGGELFNKVSKGKLKESVARKYFWQLISAVDYCHSRGVCHRDLKPENLLLDEHGNLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRRGYDGCKADIWSCGVILFVLLAGYLPFNDPNLMEMYKKIGKGEFKFPNWFAPDVRKLLSKILDPNPNTRISIAKIMASSWLRREFNVKSQINAEEVKELAPLDVDAVFVSTAEDRDSIRREQKQEMEKPLNLNAFDIISLSSGFDLSGLFEETDLKKEVRFTSNKPASTIISKLQDIAKGLKLKIKKKDRGLLKIEGCKEGRKGAVCIDAEIFEVTPSFHIVEMKKSNGDTLEYRKIMKDDIRPALKDIVWTWQGEQHQRRLLQVEQQGQEAQQQSSTDSL 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21231949 21233349 - CmPI595203_04g006960.1 Cmu04g0696 414281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0696 466 Pfam NAF domain 314 372 IPR004041 GO:0007165(InterPro)
Cmu04g0696 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu04g0696 466 CDD CIPK_C 318 432 - -
Cmu04g0696 466 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g0696 466 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Cmu04g0696 466 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Cmu04g0696 466 Gene3D Transferase(Phosphotransferase) domain 1 92 289 - -
Cmu04g0696 466 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g0696 466 FunFam Non-specific serine/threonine protein kinase 2 287 - -
Cmu04g0696 466 ProSiteProfiles NAF domain profile. 312 336 IPR018451 GO:0007165(InterPro)
Cmu04g0696 466 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g0696 466 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Cmu04g0696 466 Coils Coil 440 460 - -
Cmu04g0696 466 Gene3D Kinase associated domain 1, KA1 311 437 - -
Cmu04g0696 466 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Cmu04g0696 466 FunFam Non-specific serine/threonine protein kinase 312 436 - -
Cmu04g0696 466 CDD STKc_SnRK3 11 265 - -
Cmu04g0696 466 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 425 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1907 Cmu-Chr2:32999732 Cmu04g0696 Cmu-Chr4:21231949 1.10E-173 dispersed
Cmu03g1354 Cmu-Chr3:8670574 Cmu04g0696 Cmu-Chr4:21231949 4.20E-168 dispersed
Cmu04g0696 Cmu-Chr4:21231949 Cmu06g1287 Cmu-Chr6:24033478 1.30E-147 dispersed
Cmu04g0694 Cmu-Chr4:21135240 Cmu04g0696 Cmu-Chr4:21231949 3.00E-114 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75461 PF00069 Pkinase 2.50E-76 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0696 K07198 - csv:116406388 828.55