Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0726 ATGGCCACAAGCGTCTCGCACTCTCCCGATTTCCGCCCTGAAGTTTCAGTTCCGCCGCCGACCCATGACGGCCTTTACTTCTGGCAGTTCATGATCGCCGGGTCAATTGCAGGGTCGGTCGAGCACATGGCGATGTATCCAGTGGACACTCTCAAGACCCGAATACAAGCCCTCGGCGGCGGATCGTCAACAGTCCGACAAGCACTCGGCTCGATTCTGAAGGTGGAAGGTCCGGCAGGACTCTACCGTGGAATCGGAGCAATGGGTTTGGGAGCAGGACCTGCACACGCAGTCTATTTCTCAGTGTATGAGTTTTGCAAAGAAGGGTTTTCAATGGGAAATAACAACAACCCATTAGCGCACGCCATTGCTGGAGTTTGTGCGACGGTGACGAGCGACGCGGTGATAACGCCGATGGATGTGGTGAAACAGAGGCTGCAGTTGATGAGCAGTCCTTATAAAGGGGTGGGAGAGTGTGTGAGGAGGATTTTGGTTGAGGAAGGAATTGGGGCGCTGTATGCCTCTTATCGGACGACGGTTGTGATGAACGCACCGTATACGGCGGTGTATTTTGCGACTTATGAAGCTGCAAAAAGGGGATTGAAGGAGGTTTCACTGGGAAGTGACAACGATGAGAGGCTGATTGTTCATGCTACGGCTGGTGCGGCAGCTGGGTCTCTTGCTGCTGCTCTTACAACGCCATTAGACGTTGTGAAAACTCGGCTGCAGTGCCAGGGAGTATGTGGTTGCGACAAATTTTCAAGCAGTTCAATTGGGTACGTACTTGGTTGTGTAGTGAAGAAAGACGGCTACAGTGGGCTGATGAAGGGATGGATTCCAAGGATGATGTTCCATGCCCCTGCTGCTGCAATTTGCTGGTCCACTTATGAGGCTTCAAAAACCTTCTTTCAACATCTCCACAACGATAACAATTAG 936 51.92 MATSVSHSPDFRPEVSVPPPTHDGLYFWQFMIAGSIAGSVEHMAMYPVDTLKTRIQALGGGSSTVRQALGSILKVEGPAGLYRGIGAMGLGAGPAHAVYFSVYEFCKEGFSMGNNNNPLAHAIAGVCATVTSDAVITPMDVVKQRLQLMSSPYKGVGECVRRILVEEGIGALYASYRTTVVMNAPYTAVYFATYEAAKRGLKEVSLGSDNDERLIVHATAGAAAGSLAAALTTPLDVVKTRLQCQGVCGCDKFSSSSIGYVLGCVVKKDGYSGLMKGWIPRMMFHAPAAAICWSTYEASKTFFQHLHNDNN 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21659862 21661967 - CmPI595203_04g007260.1 Cmu04g0726 414311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0726 311 PRINTS Mitochondrial carrier protein signature 173 191 IPR002067 GO:0055085(InterPro)
Cmu04g0726 311 PRINTS Mitochondrial carrier protein signature 131 149 IPR002067 GO:0055085(InterPro)
Cmu04g0726 311 PRINTS Mitochondrial carrier protein signature 30 43 IPR002067 GO:0055085(InterPro)
Cmu04g0726 311 PRINTS Mitochondrial carrier protein signature 43 57 IPR002067 GO:0055085(InterPro)
Cmu04g0726 311 PRINTS Mitochondrial carrier protein signature 221 243 IPR002067 GO:0055085(InterPro)
Cmu04g0726 311 PANTHER MITOFERRIN-1-RELATED 20 305 - GO:0015093(PANTHER)|GO:0031966(PANTHER)|GO:0048250(PANTHER)
Cmu04g0726 311 Gene3D Mitochondrial carrier domain 110 311 IPR023395 -
Cmu04g0726 311 Pfam Mitochondrial carrier protein 116 203 IPR018108 -
Cmu04g0726 311 Pfam Mitochondrial carrier protein 213 305 IPR018108 -
Cmu04g0726 311 Pfam Mitochondrial carrier protein 25 111 IPR018108 -
Cmu04g0726 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 25 109 IPR018108 -
Cmu04g0726 311 SUPERFAMILY Mitochondrial carrier 23 297 IPR023395 -
Cmu04g0726 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 212 302 IPR018108 -
Cmu04g0726 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 200 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1923 Cmu-Chr2:33155075 Cmu04g0726 Cmu-Chr4:21659862 7.90E-123 dispersed
Cmu04g0726 Cmu-Chr4:21659862 Cmu06g1615 Cmu-Chr6:27368653 3.10E-28 dispersed
Cmu04g0726 Cmu-Chr4:21659862 Cmu08g0679 Cmu-Chr8:19024736 4.60E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0726 K15113 - csv:101210464 592.038