Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0760 ATGGCCACCGCTGCCGCAACCTCTTCCTTCATCGGAACACGCCTCGCCGAATTACGGCCGAGTTCCGGTCGAGTCCAAGCCCGATTCGGATTCGGGAAGAAGAAGACTCCGGCGAAGAAATCGCCGTCGTCGAAGACGATATCCAACCGGCCGTTGTGGTTTCCGGGAGCAAAGGCGCCGGAATGGCTGGACGGAAGCTTGGTCGGGGACTACGGATTCGATCCGTTCGGGTTGGGGAAACCGGCAGAATATTTGCAGTATGATTTGGACTCGTTGGACCAGAACTTGGCGAAGAATGTGGCGGGAGATATTATCGGGACGAGATTTGAGAGCGCGGAAGTGAAATCGACCCCGTTTCAGCCGTACACGGAGGTTTTTGGATTGCAGAGATTCCGCGAGTGCGAGCTGATCCATGGAAGGTGGGCAATGCTTGCCACACTCGGTGCTCTCTCTGTTGAATGGCTCACCGGTGTCACGTGGCAAGACGCCGGAAAAGTAGAACTAGTGGAAGGTTCATCCTACCTAGGGCAGCCACTTCCCTTCTCCCTCACCACGCTGATTTGGATCGAAGTTCTAGTGATCGGTTACATCGAGTTTCAAAGGAATGCGGAGTTAGACCCAGAGAAGAGGTTGTATCCAGGAGGCAAGTATTTCGACCCCTTGGGCTTAGCCGAGGACCCCGAAAAGAAAGCCGTCCTACAGTTGGCCGAGATCAAGCACGCTCGCCTAGCCATGGTTGCCTTCCTTGGTTTCAGCTTTCCCAGAATTTGCATTGTAAGGGAAGGAAATCGAGGATTGGTAGAGATATTGCTACAAGGAGAGGAGATGGGAAGGCTATTTTTTATTACTCTGGAAGGAAATTTTTATAGTTGCAAACACTGTAAAACTCATCTCGCCCTTTCTAAAGACATAATTTCAAGGACTTTTCATTGCAGGCATGGGAGGGCTTACTTATTTAATAACGTTGTCAATATCACAGTTGGAGAACAAGAAGAGCGGATGATGATCACGGGATTGCACACTGTTGTTGACATATTTTGTGTTGGTTGTGGCTCAATTCTTGGTTGGAAATATGAGGTTGCCTATGACAAATCCCAAAGGTACAAGGAAGGAAAATATATTCTTGAAATGTTCAAGGTGTTGGGTCCTGATGGAAACAGCTACTTAACAAGTCATGATCCGCAGCTTGCGGGTAGCGATGGCGACGATGCTTGA 1215 49.63 MATAAATSSFIGTRLAELRPSSGRVQARFGFGKKKTPAKKSPSSKTISNRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFSFPRICIVREGNRGLVEILLQGEEMGRLFFITLEGNFYSCKHCKTHLALSKDIISRTFHCRHGRAYLFNNVVNITVGEQEERMMITGLHTVVDIFCVGCGSILGWKYEVAYDKSQRYKEGKYILEMFKVLGPDGNSYLTSHDPQLAGSDGDDA 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22113993 22120562 - CmPI595203_04g007600.1 Cmu04g0760 414345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0760 404 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 5 256 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cmu04g0760 404 SUPERFAMILY Chlorophyll a-b binding protein 44 253 - -
Cmu04g0760 404 ProSiteProfiles Yippee domain profile. 287 384 IPR034751 -
Cmu04g0760 404 Pfam Chlorophyll A-B binding protein 59 253 IPR022796 -
Cmu04g0760 404 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 289 379 IPR004910 -
Cmu04g0760 404 Gene3D Chlorophyll a/b binding protein domain 53 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0025 Cmu-Chr1:198188 Cmu04g0760 Cmu-Chr4:22113993 1.60E-21 dispersed
Cmu04g0760 Cmu-Chr4:22113993 Cmu07g0457 Cmu-Chr7:4854146 7.00E-49 dispersed
Cmu03g1395 Cmu-Chr3:9224421 Cmu04g0760 Cmu-Chr4:22113993 4.10E-35 transposed
Cmu08g0638 Cmu-Chr8:18580448 Cmu04g0760 Cmu-Chr4:22113993 5.80E-25 transposed
Cmu10g2907 Cmu-Chr10:35434154 Cmu04g0760 Cmu-Chr4:22113993 2.20E-123 transposed
Cmu11g0631 Cmu-Chr11:6883461 Cmu04g0760 Cmu-Chr4:22113993 3.10E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0760 K08915 - csv:101208740 477.633