Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0792 ATGGGGGAATTAGATCAAGTGCAGGTATTTGGTGGATGGATGAGTCCCTTTAGCCGTAGAGTGGAGTTGGGTTTGAAACTCAAAGCCATAAAATATGAATATATTGAGGAAGACTTGAAGAATAAGAGCCATTTGCTTCTGAAATACAATCCAATTTACAAGAAGGTTCCTGTGCTCATTCACAATGGAAACCCCATTTCAGAGTCGATTATCATCCTTGAATACGTTGATGAAGTCTGGAATTCAGTTTACCCTTTCTTCCCTCAAGATCTCTATCAAAGAGCTCAAGCAAGGTTTTGGGCTAAGTTTATCGATGACAAGGTTGTGGCTGCTATACTGAAAGCTGCTCGAAGCAAAGGAGAAGAGAGAGAGAAGGCTATAGAAGAAACAGAGAAAACATTAGAACCACTTGAGAAGGAGCTTGAAGGCAACAAGTTTTTTGGAGGAGAGAAAATTGGATTTGTGGACATTGTTGGGATTGTAGTAGCCTATTGGGTTCCTGCCATTGAAGAAGCTTTTGGATTTCAGCTGTTGACAAGTAACAATAAGTTTCCAAATTTAAGCAAATGGAGTGAAGAGATTGTGAACCACAACCTGGTCAAACAGTTTCCAGCGGCTTACGCAGTGGCTTACGGCACTCTTAGCCTCCGCCACAAGAAATTGAAACAAAGTCGGCGAGTGGAGTTAGCTCTCAAACTCAAAGGCGTCGAATACCAATACTTTGAGGAAGATTTACCCCACAACAAGAGCCATTTGCTGCTGAAATACAATCCAATTTACAAGAAAGTGCCTGTTCTACTCCACCATGGAAAACCCATTGCAGAGTCTCTTGTAATCCTTGAATACATTGATGAAATCTGGAAAACCAATCCCATTTTACCCCAACATCCCCATCAAAGAGCTCTTGCCAGGTTCTGGGCTAAGTTTATCGATGACAAGGTTGTGTGTGCAGTAGTGAAGGCTGCTGGAAGCAAAGAAGAAGAGAGAAAGAAAGCTATAGAGGAAGCAAGGGAGGCATTGGAAGCACTTGAGAAAGAGCTTAAAAGCAACAACTTCTTTGGAGGAGAAGAAATTGGGTTTGTGGACATTGTTGGGACTGTGATAGCTGGTTGGGTTCCTGCCATTGAAGAATGCTTTGGGTTTGAGCTGCTCACAACTAATAACTTCCCTAACCTAATCAAATGGAGTGAACAGCTTCTTAACCATGCTGTTGTAAACCAGATTCTGCCTCCAAAAAATGAGATTGTTTCCTTTATGCAAGCTAATTGGAAAGTTCGAAACTAA 1284 41.67 MGELDQVQVFGGWMSPFSRRVELGLKLKAIKYEYIEEDLKNKSHLLLKYNPIYKKVPVLIHNGNPISESIIILEYVDEVWNSVYPFFPQDLYQRAQARFWAKFIDDKVVAAILKAARSKGEEREKAIEETEKTLEPLEKELEGNKFFGGEKIGFVDIVGIVVAYWVPAIEEAFGFQLLTSNNKFPNLSKWSEEIVNHNLVKQFPAAYAVAYGTLSLRHKKLKQSRRVELALKLKGVEYQYFEEDLPHNKSHLLLKYNPIYKKVPVLLHHGKPIAESLVILEYIDEIWKTNPILPQHPHQRALARFWAKFIDDKVVCAVVKAAGSKEEERKKAIEEAREALEALEKELKSNNFFGGEEIGFVDIVGTVIAGWVPAIEECFGFELLTTNNFPNLIKWSEQLLNHAVVNQILPPKNEIVSFMQANWKVRN 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22470600 22474616 + CmPI595203_04g007920.1 Cmu04g0792 414377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0792 427 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
Cmu04g0792 427 CDD GST_C_Tau 92 202 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cmu04g0792 427 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 296 425 IPR010987 -
Cmu04g0792 427 CDD GST_C_Tau 297 421 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cmu04g0792 427 Pfam Glutathione S-transferase, C-terminal domain 101 197 IPR004046 -
Cmu04g0792 427 Pfam Glutathione S-transferase, C-terminal domain 306 401 IPR004046 -
Cmu04g0792 427 CDD GST_N_Tau 7 80 - -
Cmu04g0792 427 Gene3D Glutaredoxin 221 292 - -
Cmu04g0792 427 FunFam Tau class glutathione S-transferase 1 89 - -
Cmu04g0792 427 Coils Coil 322 350 - -
Cmu04g0792 427 SUPERFAMILY GST C-terminal domain-like 78 209 IPR036282 -
Cmu04g0792 427 SUPERFAMILY Thioredoxin-like 224 314 IPR036249 -
Cmu04g0792 427 Coils Coil 113 133 - -
Cmu04g0792 427 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 223 IPR010987 -
Cmu04g0792 427 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 204 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cmu04g0792 427 SFLD Glutathione Transferase (cytosolic) 225 422 IPR040079 -
Cmu04g0792 427 SFLD Glutathione Transferase (cytosolic) 5 221 IPR040079 -
Cmu04g0792 427 Gene3D Glutaredoxin 4 89 - -
Cmu04g0792 427 Gene3D - 293 426 - -
Cmu04g0792 427 CDD GST_N_Tau 224 287 - -
Cmu04g0792 427 Pfam Glutathione S-transferase, N-terminal domain 225 285 IPR004045 -
Cmu04g0792 427 Pfam Glutathione S-transferase, N-terminal domain 6 78 IPR004045 -
Cmu04g0792 427 SUPERFAMILY GST C-terminal domain-like 285 424 IPR036282 -
Cmu04g0792 427 Gene3D - 90 220 - -
Cmu04g0792 427 SFLD Main.3: Omega- and Tau-like 225 422 IPR045073 -
Cmu04g0792 427 SFLD Main.3: Omega- and Tau-like 5 221 IPR045073 -
Cmu04g0792 427 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 211 291 IPR004045 -
Cmu04g0792 427 FunFam Tau class glutathione S-transferase 293 426 - -
Cmu04g0792 427 FunFam Tau class glutathione S-transferase 87 223 - -
Cmu04g0792 427 SUPERFAMILY Thioredoxin-like 6 108 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0792 K00799 - - rcu:8279820 353.214
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0792 Cmu-Chr4:22470600 Cmu04g0804 Cmu-Chr4:22556601 6.50E-77 dispersed
Cmu04g0792 Cmu-Chr4:22470600 Cmu04g0793 Cmu-Chr4:22477233 7.90E-51 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu09g0578 . 1 210 Glutathione S-transferase Gene Family AT4G02520 60.1 4.8e-65 244.6
Cmu09g0580 . 1 209 Glutathione S-transferase Gene Family AT4G02520 58.0 6.3e-65 244.2
Cmu09g0579 . 1 209 Glutathione S-transferase Gene Family AT4G02520 55.7 1.2e-58 223.4
Cmu09g0578 . 1 211 Glutathione S-transferase Gene Family AT2G02930 61.2 2.6e-66 248.8
Cmu09g0580 . 1 210 Glutathione S-transferase Gene Family AT2G02930 58.2 1.8e-64 242.7
Cmu09g0579 . 1 210 Glutathione S-transferase Gene Family AT2G02930 56.3 1.0e-59 226.9
Cmu09g0580 . 5 206 Glutathione S-transferase Gene Family AT1G02950 53.7 1.5e-60 229.9
Cmu09g0578 . 6 215 Glutathione S-transferase Gene Family AT1G02950 55.0 1.6e-59 226.5
Cmu09g0579 . 5 206 Glutathione S-transferase Gene Family AT1G02950 51.7 3.3e-52 202.2
Cmu09g0578 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.8 5.2e-64 241.1
Cmu09g0580 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.7 2.2e-62 235.7
Cmu09g0579 . 1 210 Glutathione S-transferase Gene Family AT1G02930 52.9 1.1e-56 216.9
Cmu09g0578 . 1 211 Glutathione S-transferase Gene Family AT1G02920 60.2 2.1e-65 245.7
Cmu09g0580 . 1 210 Glutathione S-transferase Gene Family AT1G02920 56.2 2.0e-63 239.2
Cmu09g0579 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.3 1.1e-58 223.4
Cmu09g0580 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.3 2.6e-68 255.8
Cmu09g0578 . 4 215 Glutathione S-transferase Gene Family AT2G47730 58.7 7.1e-66 247.7
Cmu09g0579 . 1 214 Glutathione S-transferase Gene Family AT2G47730 55.8 1.4e-61 233.4
Cmu09g0581 . 1 214 Glutathione S-transferase Gene Family AT3G62760 57.5 5.0e-73 271.2
Cmu09g0578 . 20 215 Glutathione S-transferase Gene Family AT1G49860 51.5 2.2e-48 189.5
Cmu04g0801 . 3 214 Glutathione S-transferase Gene Family AT3G09270 53.8 5.6e-64 241.1
Cmu04g0804 . 3 216 Glutathione S-transferase Gene Family AT3G09270 53.0 8.1e-63 237.3
Cmu04g0792 . 224 421 Glutathione S-transferase Gene Family AT3G09270 52.8 6.0e-58 221.1
Cmu05g0272 . 2 213 Glutathione S-transferase Gene Family AT3G09270 50.9 1.3e-57 219.9
Cmu04g0805 . 3 212 Glutathione S-transferase Gene Family AT3G09270 53.8 3.3e-56 215.3
Cmu07g1047 . 1 214 Glutathione S-transferase Gene Family AT1G78380 71.0 5.5e-88 320.9
Cmu07g1049 . 1 216 Glutathione S-transferase Gene Family AT1G78380 70.4 1.2e-87 319.7
Cmu07g1048 . 1 217 Glutathione S-transferase Gene Family AT1G78380 66.8 1.0e-81 300.1
Cmu01g0823 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.0 1.4e-67 253.1
Cmu07g1050 . 1 201 Glutathione S-transferase Gene Family AT1G78380 52.2 5.5e-56 214.5
Cmu07g1047 . 7 214 Glutathione S-transferase Gene Family AT1G78370 65.4 5.4e-80 294.3
Cmu07g1049 . 7 214 Glutathione S-transferase Gene Family AT1G78370 62.0 1.5e-74 276.2
Cmu07g1048 . 7 216 Glutathione S-transferase Gene Family AT1G78370 56.2 3.3e-69 258.5
Cmu01g0823 . 7 220 Glutathione S-transferase Gene Family AT1G78370 53.7 1.3e-62 236.5
Cmu07g1050 . 1 202 Glutathione S-transferase Gene Family AT1G78370 50.5 1.8e-54 209.5
Cmu07g1047 . 1 214 Glutathione S-transferase Gene Family AT1G78340 64.5 2.4e-80 295.4
Cmu07g1049 . 1 216 Glutathione S-transferase Gene Family AT1G78340 64.4 9.3e-80 293.5
Cmu07g1048 . 1 217 Glutathione S-transferase Gene Family AT1G78340 59.4 7.6e-74 273.9
Cmu01g0823 . 4 218 Glutathione S-transferase Gene Family AT1G78340 53.5 6.1e-63 237.7
Cmu07g1050 . 1 199 Glutathione S-transferase Gene Family AT1G78340 50.8 3.9e-54 208.4
Cmu07g1047 . 1 216 Glutathione S-transferase Gene Family AT1G78320 53.7 6.6e-61 230.7
Cmu07g1047 . 1 218 Glutathione S-transferase Gene Family AT1G17180 70.2 9.1e-91 330.1
Cmu07g1049 . 1 219 Glutathione S-transferase Gene Family AT1G17180 63.9 2.4e-83 305.4
Cmu07g1048 . 1 220 Glutathione S-transferase Gene Family AT1G17180 60.9 1.2e-79 293.1
Cmu01g0823 . 4 224 Glutathione S-transferase Gene Family AT1G17180 54.8 4.1e-67 251.5
Cmu07g1050 . 1 195 Glutathione S-transferase Gene Family AT1G17180 52.3 3.0e-57 218.8
Cmu07g1047 . 2 217 Glutathione S-transferase Gene Family AT1G17190 58.8 1.8e-75 279.3
Cmu07g1049 . 2 217 Glutathione S-transferase Gene Family AT1G17190 56.9 1.1e-72 270.0
Cmu07g1048 . 2 218 Glutathione S-transferase Gene Family AT1G17190 53.5 4.8e-68 254.6
Cmu07g1050 . 1 185 Glutathione S-transferase Gene Family AT1G17190 54.1 2.4e-51 199.1
Cmu07g1047 . 3 214 Glutathione S-transferase Gene Family AT3G43800 59.3 1.1e-72 270.0
Cmu07g1049 . 3 214 Glutathione S-transferase Gene Family AT3G43800 56.9 7.0e-70 260.8
Cmu07g1048 . 3 212 Glutathione S-transferase Gene Family AT3G43800 51.6 9.7e-64 240.4
Cmu07g1047 . 1 218 Glutathione S-transferase Gene Family AT1G53680 58.3 6.2e-71 264.2
Cmu07g1049 . 2 219 Glutathione S-transferase Gene Family AT1G53680 56.4 6.4e-68 254.2
Cmu01g0823 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.9 1.3e-63 240.0
Cmu07g1050 . 1 201 Glutathione S-transferase Gene Family AT1G53680 52.0 2.6e-53 205.7
Cmu02g0037 . 55 221 Glutathione S-transferase Gene Family AT2G02390 68.3 1.0e-61 233.4
Cmu05g0245 . 777 943 Glutathione S-transferase Gene Family AT2G02390 52.1 6.3e-48 187.6
Cmu02g0037 . 12 224 Glutathione S-transferase Gene Family AT2G02380 64.3 1.3e-76 283.1
Cmu05g0245 . 734 942 Glutathione S-transferase Gene Family AT2G02380 54.1 9.9e-61 230.3
Cmu07g0806 . 101 337 Glutathione S-transferase Gene Family AT5G41210 67.9 3.1e-92 335.1
Cmu07g0806 . 101 337 Glutathione S-transferase Gene Family AT5G41240 66.2 3.5e-89 326.2
Cmu10g2788 . 1 235 Glutathione S-transferase Gene Family AT5G02780 67.4 7.0e-89 323.9
Cmu10g2787 . 13 232 Glutathione S-transferase Gene Family AT5G02780 68.9 2.6e-83 305.4
Cmu02g1366 . 75 294 Glutathione S-transferase Gene Family AT5G02780 65.8 3.5e-80 295.0
Cmu02g1366 . 29 292 Glutathione S-transferase Gene Family AT3G55040 61.1 1.2e-85 313.5
Cmu10g2788 . 6 233 Glutathione S-transferase Gene Family AT3G55040 61.0 1.1e-78 290.4
Cmu10g2787 . 3 230 Glutathione S-transferase Gene Family AT3G55040 59.0 1.2e-77 287.0
Cmu10g2788 . 1 235 Glutathione S-transferase Gene Family AT5G02790 69.4 1.4e-94 342.8
Cmu10g2787 . 7 232 Glutathione S-transferase Gene Family AT5G02790 69.2 1.8e-89 325.9
Cmu02g1366 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.9 3.7e-82 301.6
Cmu02g1343 . 3 230 Glutathione S-transferase Gene Family AT1G19570 61.1 1.5e-77 286.2
Cmu05g1238 . 65 272 Glutathione S-transferase Gene Family AT1G19570 58.9 3.1e-72 268.5
Cmu02g1343 . 3 229 Glutathione S-transferase Gene Family AT1G75270 65.4 1.8e-83 305.8
Cmu05g1238 . 65 272 Glutathione S-transferase Gene Family AT1G75270 62.2 4.0e-75 278.1
Cmu05g1238 . 9 274 Glutathione S-transferase Gene Family AT5G16710 68.3 7.1e-103 370.5
Cmu02g1343 . 5 228 Glutathione S-transferase Gene Family AT5G16710 54.9 5.1e-69 258.1
Cmu11g1596 . 1 136 Glutathione S-transferase Gene Family AT1G77290 66.9 3.2e-50 195.7
Cmu11g1597 . 1 101 Glutathione S-transferase Gene Family AT1G77290 76.2 6.1e-41 164.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000231 3 5 1 2 2 8 4 7 6 9 3 5 6 8 8 6 6 1 5 7 8 4 5 5 7 9 4 6 8 4 162