Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0834 ATGGAAACCCATCTTCCGCCCCTGTTCTTTCTTCTCATTTTCCTCTCATTCTTCCTCTGCTGCCCTGCCAAGCGCTGCCCAGACTGCGGCCACACGCCGGTGCCGTACCCACTCAGCACAAGCCCAGATTGCGGTGACCCTCTTTACAGAGTCCGGTGCGCCGCCCCCGAACTCTGGTTCGAGTCCGTCAATGGGTCTTTCTATTTGATCACTTCCGTTAATCCGGTGGCACAGAGGCTGATCGTCCGGCCGCCGGGGTTGGCCAAAAACACCTGCGTTTCGTCGGATTTTGGTACCAGTGGTTTTTGGCTCGACACGCGCCTTCCTTTCACCATTTCCGATAGAAACACGGTTTTGCTCTACAACTGTTCGGTAGAAGTTCTCGAAAATAGTTGGAATTGTGCACCTAATAGCATCTGTCATGACTTTATCAGACAGAATCCGGTGGCAATGGCAGCGTGTAAGGTGGCGCCGACGTGCTGTTGGTACACAAGTGGCGGTTCCATGACTGCGTCTAGAATCAGGGTGCGAAAGGAGCGGTGTTCGGCTTATGAATGTTTTGTGAATATGGGTAGTTCTGTTCCGCCGAAGAAGTGGCCGGAACCTGGGGTCGAGATTCAATGGACACCACCCCGAGAGCCGGCATGTCGTGTGGCTACGGACTGCCGGAATTGGGTGAATTCTGCTTGTTCGCCGGACCCTGCAAACGCCGGGCAGAGGAGGTGCTTATGCAAGGTTCCTTTTAAGTGGGATCCTATAAATGGCTTGTGTAGTGGCAACAATTTGAAAATACAGAACAAGATAACTCACAAGAAGCACAAGAAGATGCCTGTTATTCTTGGAGCAATGGCGGGAGTATTTGTAATGGTGATTGGAGGTTCAATCATGTTTATAATTTCCAAAAGACGTCGACAGATTCCGAAGGGGAACGAGCTGAGTTCGAAACAAGTTCGTGAAGTGATTCTAACCGCCAACAGCAGTGGAAAATCGGCGAGGATGTTCACAACCAAAGAGATAGCAAAGGCTACAAACAACTTCTCCAAGGAGAATTTGCTTGGCTCTGGTGGCTATGGAGAGGTCTTCAAAGGCAACTTAGAAGATGGAACCTCAATAGCAGTTAAACGTGCAAAGTTGGGTAGCATGAAGGGTATTGATCAAATCCTGAACGAGGTTCGGATTCTTTGTCAGGTAAACCATCGATACCTCGTTCGTCTACTTGGATGTTGTCTCGAACTTGAGCAACCCCTCTTAATATATGAGTACATCTCGAATGGGAACCTGTTTGATCACCTTCATGGGAATACAAGTTCAAGCAAATGGCCACCGTTGACATTGAGTCGTCGACTCTGCATAGCTTGGCAAACAGCCGAGGGCCTTGCTTATCTCCACACTTCAGCCACACCAAGAATCTATCACCGAGACATAAAGTCGAGCAATATTCTACTGGACGAGAAGTTAAATGCCAAAGTAGCTGATTTTGGGCTGTCTAGATTGGCTATAACTGAATCAAGCCATATTACAACTGGGGCTCAGGGAACATTAGGTTATCTTGACCCAGAATATTACCTTAATTTCCAATTGACAGACAAGAGTGATGTTTATAGTTTTGGAGTTGTCATGTTGGAGCTATTGACTTCGGAGAAAGCCATTGATTTTAATAGGGAAGAGGAAGATGTAAATTTAGTAGTTTATATCAAGAAGATAATCCAAGAAGACAGATTGATGGAGGTTGTTGATCCTGTGATTAAACAGAGAGCAAGCAGAGTTGAAATGGAGATAATCAAGGCATTAGGGTCTTTAGCAGCAGCTTGCTTGGATGAAAAGAGGCAGAATAGACCTGCCATGAAAGAAGTTGCTGATGAGCTAGCCAATATTATTTCCATTCTTAATAATGAGGTTAGAAATATTGACTAA 1914 46.39 METHLPPLFFLLIFLSFFLCCPAKRCPDCGHTPVPYPLSTSPDCGDPLYRVRCAAPELWFESVNGSFYLITSVNPVAQRLIVRPPGLAKNTCVSSDFGTSGFWLDTRLPFTISDRNTVLLYNCSVEVLENSWNCAPNSICHDFIRQNPVAMAACKVAPTCCWYTSGGSMTASRIRVRKERCSAYECFVNMGSSVPPKKWPEPGVEIQWTPPREPACRVATDCRNWVNSACSPDPANAGQRRCLCKVPFKWDPINGLCSGNNLKIQNKITHKKHKKMPVILGAMAGVFVMVIGGSIMFIISKRRRQIPKGNELSSKQVREVILTANSSGKSARMFTTKEIAKATNNFSKENLLGSGGYGEVFKGNLEDGTSIAVKRAKLGSMKGIDQILNEVRILCQVNHRYLVRLLGCCLELEQPLLIYEYISNGNLFDHLHGNTSSSKWPPLTLSRRLCIAWQTAEGLAYLHTSATPRIYHRDIKSSNILLDEKLNAKVADFGLSRLAITESSHITTGAQGTLGYLDPEYYLNFQLTDKSDVYSFGVVMLELLTSEKAIDFNREEEDVNLVVYIKKIIQEDRLMEVVDPVIKQRASRVEMEIIKALGSLAAACLDEKRQNRPAMKEVADELANIISILNNEVRNID 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22858253 22860354 - CmPI595203_04g008340.1 Cmu04g0834 414419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0834 637 CDD STKc_IRAK 352 625 - -
Cmu04g0834 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu04g0834 637 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524(InterPro)
Cmu04g0834 637 Gene3D Transferase(Phosphotransferase) domain 1 422 635 - -
Cmu04g0834 637 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 318 421 - -
Cmu04g0834 637 SMART serkin_6 346 629 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g0834 637 SUPERFAMILY Protein kinase-like (PK-like) 329 622 IPR011009 -
Cmu04g0834 637 Pfam Protein tyrosine and serine/threonine kinase 349 622 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu04g0834 637 ProSiteProfiles Protein kinase domain profile. 346 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g0834 637 Gene3D Phosphorylase Kinase; domain 1 308 421 - -
Cmu04g0834 637 FunFam Wall-associated receptor kinase-like 20 422 635 - -
Cmu04g0834 637 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 17 625 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0834 Cmu-Chr4:22858253 Cmu08g0566 Cmu-Chr8:17803497 7.90E-79 dispersed
Cmu02g1515 Cmu-Chr2:28847249 Cmu04g0834 Cmu-Chr4:22858253 2.10E-36 transposed
Cmu10g2679 Cmu-Chr10:33567897 Cmu04g0834 Cmu-Chr4:22858253 9.10E-152 transposed
Cmu11g0669 Cmu-Chr11:7376180 Cmu04g0834 Cmu-Chr4:22858253 4.20E-186 transposed
Cmu02g1976 Cmu-Chr2:33545794 Cmu04g0834 Cmu-Chr4:22858253 1.50E-55 wgd
Cmu04g0834 Cmu-Chr4:22858253 Cmu05g0937 Cmu-Chr5:8568841 5.90E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75464 PF07714 PK_Tyr_Ser-Thr 1.80E-46 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0834 - - - 0.0