Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0854 ATGGCTTCTCTCTCTCTCCTCTGCTCCATTGCCTTCGCTTCTTTCTCCTCCCTCTTCCTCCTCTCTCACGCCAGAATCCCCGGTGTCTACTCCGGCGGCCCCTGGCAGGACGCTCATGCCACCTTCTATGGCGGCAGTGATGCCTCCGGAACCATGGGTGGTGCTTGTGGGTATGGGAATCTCTACAGCCAGGGCTATGGCGTCAACACAGCCGCCCTCAGTACTGCTCTCTTCAACAATGGCTTAAGCTGTGGTGCTTGCTTCGAGATCAAGTGTGCTAATGACCCTAGATGGTGCCATCCTGGTAGCCCATCCATTTTCATTACAGCTACCAATTTTTGTCCCCCGAATTTCGCACTGCCAAATGACAATGGCGGTTGGTGTAACCCTCCTCGTACTCATTTCGATCTCGCTATGCCTATGTTCCTCAAGATCGCTGAGTACCGCGCCGGAATCGTCCCCGTCACTTACCGCCGGGTGCCATGTAGGAAACAAGGGGGAATCAGATTCACTATCAACGGTTTCCGTTACTTCAACTTGGTATTGATCACCAACGTCGCGGGTGCAGGGGATATCGTGAAGGTTAGCGTCAAAGGATCAAACACCGATTGGATGAGCATGAGCCGTAACTGGGGACAAAATTGGCAATCCAACTCTGTTTTGGTGGGCCAGGCCCTTTCCTTTCGCGTCACCGGCAGTGACCGTCGTACCTCAACCTCATGGAACGTGGCACCATCTAATTGGCAGTTCGGTCAGACCTTCACGGGAAAGAATTTCCGCGTTTGA 786 53.44 MASLSLLCSIAFASFSSLFLLSHARIPGVYSGGPWQDAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHPGSPSIFITATNFCPPNFALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVTYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKVSVKGSNTDWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23047064 23048520 + CmPI595203_04g008540.1 Cmu04g0854 414439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0854 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 256 IPR007117 -
Cmu04g0854 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 167 IPR007112 -
Cmu04g0854 261 Pfam Expansin C-terminal domain 168 245 IPR007117 -
Cmu04g0854 261 SUPERFAMILY PHL pollen allergen 164 256 IPR036749 -
Cmu04g0854 261 Pfam Lytic transglycolase 70 157 IPR009009 -
Cmu04g0854 261 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576(InterPro)
Cmu04g0854 261 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576(InterPro)
Cmu04g0854 261 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576(InterPro)
Cmu04g0854 261 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576(InterPro)
Cmu04g0854 261 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576(InterPro)
Cmu04g0854 261 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576(InterPro)
Cmu04g0854 261 Gene3D - 167 259 IPR036749 -
Cmu04g0854 261 Gene3D - 23 163 IPR036908 -
Cmu04g0854 261 PRINTS Expansin signature 242 258 IPR002963 GO:0009664(InterPro)
Cmu04g0854 261 PRINTS Expansin signature 142 155 IPR002963 GO:0009664(InterPro)
Cmu04g0854 261 PRINTS Expansin signature 106 116 IPR002963 GO:0009664(InterPro)
Cmu04g0854 261 PRINTS Expansin signature 125 142 IPR002963 GO:0009664(InterPro)
Cmu04g0854 261 PRINTS Expansin signature 166 178 IPR002963 GO:0009664(InterPro)
Cmu04g0854 261 PRINTS Expansin signature 92 103 IPR002963 GO:0009664(InterPro)
Cmu04g0854 261 PRINTS Expansin signature 213 234 IPR002963 GO:0009664(InterPro)
Cmu04g0854 261 PRINTS Expansin signature 65 79 IPR002963 GO:0009664(InterPro)
Cmu04g0854 261 PRINTS Expansin signature 178 199 IPR002963 GO:0009664(InterPro)
Cmu04g0854 261 FunFam Expansin 24 163 - -
Cmu04g0854 261 CDD DPBB_EXPA_N 34 162 - -
Cmu04g0854 261 SMART dpbb_1 70 157 IPR007112 -
Cmu04g0854 261 SUPERFAMILY Barwin-like endoglucanases 34 185 IPR036908 -
Cmu04g0854 261 FunFam Expansin 167 259 - -
Cmu04g0854 261 PANTHER EXPANSIN-A15 17 259 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0854 Cmu-Chr4:23047064 Cmu07g0561 Cmu-Chr7:6844854 5.30E-106 dispersed
Cmu04g0987 Cmu-Chr4:24399327 Cmu04g0854 Cmu-Chr4:23047064 4.30E-93 transposed
Cmu07g0753 Cmu-Chr7:17998821 Cmu04g0854 Cmu-Chr4:23047064 3.60E-78 transposed
Cmu02g2002 Cmu-Chr2:33783402 Cmu04g0854 Cmu-Chr4:23047064 8.80E-138 wgd
Cmu03g0763 Cmu-Chr3:1825738 Cmu04g0854 Cmu-Chr4:23047064 5.40E-135 wgd
Cmu04g0854 Cmu-Chr4:23047064 Cmu07g0379 Cmu-Chr7:3820281 1.70E-136 wgd
Cmu04g0854 Cmu-Chr4:23047064 Cmu09g1886 Cmu-Chr9:34982194 2.50E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0854 - - - 0.0