Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0858 ATGGCTGAGAACGAGGATATCCAACCTCTCGTCTGTGATAATGGAACAGGAATGGTTAAGGCTGGGTTTGCAGGAGATGATGCTCCAAGGGCTGTCTTCCCTAGCATTGTTGGTCGCCCCCGTCATACAGGTGTTATGGTTGGAATGGGACAAAAAGATGCTTATGTTGGGGATGAGGCTCAGTCCAAGCGTGGTATTTTGACTCTCAAATACCCTATTGAGCATGGAATTGTCAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACTTTCTACAACGAACTTCGTGTCGCTCCGGAAGAGCATCCAGTTCTTCTCACTGAGGCACCCCTCAATCCCAAAGCTAACCGTGAGAAAATGACCCAGATTATGTTTGAGACCTTCAATGCACCAGCTATGTATGTAGCCATTCAAGCTGTTCTTTCCCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTTGATTCTGGAGATGGTGTCAGTCACACAGTCCCCATCTACGAGGGATATGCACTTCCACATGCTATCCTACGTCTCGATCTTGCTGGCCGTGACCTGACCGATGCCCTCATGAAAATTTTGACTGAGCGTGGTTATTCATTCACCACCACAGCCGAGCGTGAAATTGTGAGAGATATGAAGGAAAAACTGGCCTACATTGCCCTTGACTATGAGCAAGAATTAGAAACCTCTAAGACCAGCTCTTCTGTTGAGAAGAGCTATGAGTTGCCTGACGGTCAGGTGATTACCATCGGCGCTGAGCGTTTCCGATGCCCAGAAGTCCTTTTCCAGCCATCCATGATCGGTATGGAAGCTGCCGGTATTCATGAGACAACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAAGATTTGTATGGAAACATTGTGCTCAGTGGTGGTTCAACCATGTTCCCCGGCATTGCTGATAGAATGAGCAAGGAGATCACGGCGTTGGCCCCGAGCAGCATGAAGATTAAGGTGGTTGCGCCACCTGAAAGGAAATACAGTGTGTGGATTGGAGGTTCCATCTTGGCATCCTTGAGCACTTTCCAGCAGATGTGGATTGCCAAGGCTGAATATGATGAGTCTGGCCCTTCAATTGTCCACAGGAAATGCTTCTAA 1134 47.62 MAENEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23120473 23122239 - CmPI595203_04g008580.1 Cmu04g0858 414443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0858 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cmu04g0858 377 FunFam Major actin 260 340 - -
Cmu04g0858 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cmu04g0858 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cmu04g0858 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cmu04g0858 377 PRINTS Actin signature 51 62 IPR004000 -
Cmu04g0858 377 PRINTS Actin signature 238 254 IPR004000 -
Cmu04g0858 377 PRINTS Actin signature 63 85 IPR004000 -
Cmu04g0858 377 PRINTS Actin signature 142 161 IPR004000 -
Cmu04g0858 377 PRINTS Actin signature 28 37 IPR004000 -
Cmu04g0858 377 PRINTS Actin signature 117 130 IPR004000 -
Cmu04g0858 377 FunFam Putative actin-related protein 5 341 369 - -
Cmu04g0858 377 Gene3D - 140 340 - -
Cmu04g0858 377 FunFam Actin, muscle 182 273 - -
Cmu04g0858 377 Pfam Actin 5 377 IPR004000 -
Cmu04g0858 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cmu04g0858 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cmu04g0858 377 FunFam Actin, alpha skeletal muscle 3 178 - -
Cmu04g0858 377 Gene3D - 10 371 - -
Cmu04g0858 377 SMART actin_3 7 377 IPR004000 -
Cmu04g0858 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Cmu04g0858 377 Gene3D Actin; Chain A, domain 4 182 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0858 Cmu-Chr4:23120473 Cmu07g0369 Cmu-Chr7:3658119 1.80E-216 dispersed
Cmu10g2489 Cmu-Chr10:31536873 Cmu04g0858 Cmu-Chr4:23120473 1.10E-217 transposed
Cmu02g2013 Cmu-Chr2:33870407 Cmu04g0858 Cmu-Chr4:23120473 6.30E-217 wgd
Cmu04g0858 Cmu-Chr4:23120473 Cmu09g1894 Cmu-Chr9:35047081 4.50E-215 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0858 K10355 - csv:101214246 749.584