Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0866 ATGGTATTTCCTTCCATTCCATCTAATTATCTTGATCCAACAACAACCCATCAATGGCATCAGCAAACAGCAAGCCAACAATCTGGGAGTAGCAGTTTTCAGCTGGCGGGGTCACCAGCACCGCCACAAGTTCGGCCGGTGTCTATGGCAGATCGGGCTCGAATGGCGAACCTGCCGGTGCCGGAGACGGCACTGAAGTGTCCAAGATGTGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTATAGCCTCTCTCAGCCCCGCCATTTCTGCAAGACCTGCCGCCGCTACTGGACCAGAGGTGGCGCTCTCAGAAGCGTCCCGGTCGGCGGCGGCTACCGCCGGAATACTAAAAGAACCAAAAGTACCTCTAAATCTCCGGTTAACTCCCAATGTCAACCTACTACTACTGAGGTTTCAGGAGGAGAAGCAATGAGATTAAATTACAATAATGCCATTTCCACACAAAATGAAGGAGCTGTGGATTCAACTCATCATCCCATTGGGATAGCCAACTTTTTAGGGTTTGATCAAATTCAATGGCGACCACAGCTTCAACTTCACCAAACACAACAGTCTCCATTGCTTGTAAATTCAGCTCGGTTGCTTGGAAATGGTGGCATCGAGGCATCGCCGAGCTATAGCATCGTTAGACAGATTCAAAAGAAGATGGAAGCGACGACGAAAATGGAGGAAGATGGGCAACAAGTAGAGATGAATGTTGCAAAGCCATTTTGGGGAGTTGTTGGAGGAAGTGATCATCGCCATTATTGGAGTGGTTTTAATCCTTCATCTTCTTCCCATTCATAA 813 47.36 MVFPSIPSNYLDPTTTHQWHQQTASQQSGSSSFQLAGSPAPPQVRPVSMADRARMANLPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNTKRTKSTSKSPVNSQCQPTTTEVSGGEAMRLNYNNAISTQNEGAVDSTHHPIGIANFLGFDQIQWRPQLQLHQTQQSPLLVNSARLLGNGGIEASPSYSIVRQIQKKMEATTKMEEDGQQVEMNVAKPFWGVVGGSDHRHYWSGFNPSSSSHS 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23198980 23200498 - CmPI595203_04g008660.1 Cmu04g0866 414451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0866 270 MobiDBLite consensus disorder prediction 22 45 - -
Cmu04g0866 270 Pfam Dof domain, zinc finger 64 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu04g0866 270 MobiDBLite consensus disorder prediction 110 141 - -
Cmu04g0866 270 MobiDBLite consensus disorder prediction 123 141 - -
Cmu04g0866 270 MobiDBLite consensus disorder prediction 22 38 - -
Cmu04g0866 270 ProSitePatterns Zinc finger Dof-type signature. 67 103 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu04g0866 270 ProSiteProfiles Zinc finger Dof-type profile. 65 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu04g0866 270 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 52 190 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0866 Cmu-Chr4:23198980 Cmu07g1336 Cmu-Chr7:28661363 9.50E-26 dispersed
Cmu10g2821 Cmu-Chr10:34753018 Cmu04g0866 Cmu-Chr4:23198980 3.60E-38 wgd
Cmu02g2021 Cmu-Chr2:33927175 Cmu04g0866 Cmu-Chr4:23198980 2.60E-36 wgd
Cmu03g0779 Cmu-Chr3:1974577 Cmu04g0866 Cmu-Chr4:23198980 1.00E-35 wgd
Cmu04g0866 Cmu-Chr4:23198980 Cmu07g0371 Cmu-Chr7:3678771 5.40E-37 wgd
Cmu04g0866 Cmu-Chr4:23198980 Cmu09g1907 Cmu-Chr9:35135199 3.30E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6011 PF02701 zf-Dof 3.50E-31 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0866 - - - 0.0