Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0873 ATGAACATGAACATGAATATGAGCTCCATCAAAACAGCCTCCAATGGAGTATGGCAAGGTGATAATCCTCTCCACTTTGCTTTCCCTTTATTGATCCTTCAATCCGTCCTCATCCTTCTCCTCACTCGCTTCCTCGCCCTCCTCCTCAAGCCCCTCCGCCAGCCCAAAGTCATCGCCGAAATCGTCGGCGGGATTCTACTGGGTCCATCCGCTTTCGGGCGTAACAAAACTTATTTACACCATGTTTTCCCTCCATGGAGTACTCCCATTCTGGAATCCGTCGCAAGTATTGGTTTACTGTTTTTCCTCTTCCTCGTTGGACTCGAACTCGATTTCTCCTCCATCCGTCGTAGCGGTAGACGAGCTTTCGGAATTGCCTTAGCTGGAATCTCTGTTCCCTTCCTTTCTGGCATCGGTGTTGCCTTCGTCCTTCGTAAAACCGTCGACGGTGCTGATAAAGTCGGTTACGGTCAGTTCATTGTATTCATGGGTGTTGCTCTCTCCATCACTGCTTTTCCTGTTTTAGCTCGCATTTTAGCCGAACTCAAACTCCTCACTACCCAAGTCGGCGAAACCGCAATGGCCGCTGCCGCATTCAACGACGTTGCCGCTTGGATCCTCCTTGCACTCGCCGTTGCCTTGGCCGGTAACGGCGGTGAAGGCGGATCGCAGAAGAGTCCGTTGGTTTCCGTGTGGGTCTTACTTTCGGGAGCCGGCTTCGTGATTTTCATGATGATGGTCACTCGACCGGGAATGAAATGGGTGGCACGGCGGTGTTCGTACGAACACGACGCCGTGGACGAAGCCTATATCTGTTTGACGTTAGTCGGAGTGTTGGTTTCGGGATTTGTGACGGATTTGATCGGAATTCATTCGATTTTTGGGGGATTTATATTTGGATTGACGATTCCGAAAGGGGGAAGATTTGCGGAGAGATTGATTGAGAGAATTGAAGATTTCGTTTCGGGTCTTCTTCTTCCTCTGTATTTTGCTTCCAGTGGATTGAAGACGGATGTGGCCAAAATTAAAGGGGGAAAAGCTTGGGGGTTGCTGGCGTTGGTTATTTCGACGGCGTGCGCCGGTAAGATTCTGGCGACGTTTGTGGCGGCGATGGCGTTTTTGATACCGGCGAGGGAGGCGCTGGCGTTGGGGCTGCTTATGAACACCAAAGGCTTGGTTGAACTCATTGTGCTCAATATTGGGAAGGAGAAAAAGGTTCTTAACGACGAAGTATTCGCCATATTAGTGTTGATGGCACTATTCACAACATTCATCACCACCCCCACCGTGATGGCGGTTTACAAGCCAGCCCGCGGCGGCTCCACCCCGCCTACCCACCGTAAACTCCGCGACCTCTCCGCCGACGACTCCACTGTCGATGACGAGCTCCGAATCCTGGCTTGCCTCCACAGCTCCGGCAACGTGCCGTCCCTCATCACCCTGACGGAGTCAACTCGCAGCACCAAAAATTCCTCCCTCAAACTCTTCGTGATGCACCTGGTTGAACTCACCGAGAGATCCTCTTCCATAATGATGGTCCAACGCGCCCGCAAAAACGGCTTCCCTTTCTTTGCCCGGTTCCGCAAGGCCAGCGAGTGGCGGGACCAAATGGCTGCGGCCTTTCAGGCCTACAGCCAATTGGGCCGAGTCAAGGTCCGGCCCACTACGGCGGTCTCTTCCTTAGCTACTATGCATGAGGATATCTGCCACGTGGCGGATGATAAGAGGGTCACTATGATCATCTTGCCGTTTCATCGGAATTGGAGGTTGTTTGGCGGTGGCGACGACAAGGAGGAGGTGGAGGAGAATGTGGGCCATGGCTGGAGAGTTGTGAACCAACGGGTTTTGAAGAATGCCCCTTGCTCTGTGGCGGTTCTTGTGGACCGTGGATTTGGGGCCGCGGCGGCCCAGACGCCTGGGCCTGGGCCCATAGTTGGTGTGGGCCAAAGAATTTGTGTTGTATTTTTTGGTGGGCCTGATGATCGGGAGGCGCTGGAGTTGGGGGGCCGGATGGCGGAGCATCCGGCGGTGAAGGTCACGGTGGTCAGGTTTCGGCCGACGTCGACGGATGGGATGGAGGGTAGTAATGTCATTTTCCGTCCCATGCATTCGAAATCGGGTGACAACCATTATAGCTTCACTACCACTCCAATCAACCGGGAAAAAGAAAAGGAGCAAGATGATGCAGCATTGGGAGAATTCAGAAGCAAATGGGATGCAACAGTTGAGTACATAGAGAAGGAGGTAAGCAACATGAACATGATAGTTGAAGGGGTGGTGAGCCTCGGAAAGGAAGGCGGTTACGACCTAATCGTGGTCGGGAGGGGTCGGGTTCCCTCGAGCATGGTGGCGAAATTAGCGGACCGACCCGCGGAACATGCCGAGTTGGGGCCAGTAGGGGACATATTGGCTAGCTCCGGGAAGGGAATAGTATCTTCAATACTAATAATTCAACAACATGGAGGAGGTGCTCATGTAGAAGAAACTCCAGTTTTGAAGATAGCACAATCCAATAAGAATGAGCAGCCTTTGTCAACTGATGGAGCTTTAATTGATCATGTATAA 2565 52.48 MNMNMNMSSIKTASNGVWQGDNPLHFAFPLLILQSVLILLLTRFLALLLKPLRQPKVIAEIVGGILLGPSAFGRNKTYLHHVFPPWSTPILESVASIGLLFFLFLVGLELDFSSIRRSGRRAFGIALAGISVPFLSGIGVAFVLRKTVDGADKVGYGQFIVFMGVALSITAFPVLARILAELKLLTTQVGETAMAAAAFNDVAAWILLALAVALAGNGGEGGSQKSPLVSVWVLLSGAGFVIFMMMVTRPGMKWVARRCSYEHDAVDEAYICLTLVGVLVSGFVTDLIGIHSIFGGFIFGLTIPKGGRFAERLIERIEDFVSGLLLPLYFASSGLKTDVAKIKGGKAWGLLALVISTACAGKILATFVAAMAFLIPAREALALGLLMNTKGLVELIVLNIGKEKKVLNDEVFAILVLMALFTTFITTPTVMAVYKPARGGSTPPTHRKLRDLSADDSTVDDELRILACLHSSGNVPSLITLTESTRSTKNSSLKLFVMHLVELTERSSSIMMVQRARKNGFPFFARFRKASEWRDQMAAAFQAYSQLGRVKVRPTTAVSSLATMHEDICHVADDKRVTMIILPFHRNWRLFGGGDDKEEVEENVGHGWRVVNQRVLKNAPCSVAVLVDRGFGAAAAQTPGPGPIVGVGQRICVVFFGGPDDREALELGGRMAEHPAVKVTVVRFRPTSTDGMEGSNVIFRPMHSKSGDNHYSFTTTPINREKEKEQDDAALGEFRSKWDATVEYIEKEVSNMNMIVEGVVSLGKEGGYDLIVVGRGRVPSSMVAKLADRPAEHAELGPVGDILASSGKGIVSSILIIQQHGGGAHVEETPVLKIAQSNKNEQPLSTDGALIDHV 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23277483 23282912 + CmPI595203_04g008730.1 Cmu04g0873 414458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0873 854 FunFam Cation/H(+) antiporter 15 30 440 - -
Cmu04g0873 854 Gene3D - 464 797 - -
Cmu04g0873 854 Pfam Sodium/hydrogen exchanger family 40 430 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cmu04g0873 854 Gene3D - 30 438 IPR038770 -
Cmu04g0873 854 PANTHER CATION/H + ANTIPORTER 8 822 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0873 Cmu-Chr4:23277483 Cmu07g0768 Cmu-Chr7:18924519 6.20E-212 dispersed
Cmu04g0873 Cmu-Chr4:23277483 Cmu07g0526 Cmu-Chr7:6150214 6.40E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0873 K26731 - csv:101207589 1483.77