Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0891 ATGGGTAACGCCCATGGCCACCGCAAGCATTTCAACCATGGCGTAAATACCTCTCCACCCACTAATAACGCTCCTTCTCCCTTCAATAAATACTCCTCATCTGAACCCACTTCTCGAAATTCCACCTCCACCTCGAAGATGGCGTCCTTGCCCTACGCCCATGTTGATTCCAGCCTGCGAGCCCTTGCCGCTCAGGCTGAGGGCTTTGGCCGCTCTGCCATTGGTGGTCTCCATGGTTCTGTTTATTGTGTCACTAATTTAGCAGATGATGGTCCGGGATCACTTAGGTTTGGATGTCGTAAGAAAGAGCCCCTTTGGATTATCTTTGAAGTTTCGGGCACAATTCACTTGTCTACATATCTGAGTGTATCATCGTACAAGACTGTAGATGGTCGTGGTCAAAGGATAAAACTTACAGGAAAGGGATTGAGGCTGAAGGAATGTGAGCATGTGATCATTTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTTGATGGAATTCAAATTAAGCCTAATTCAAAGCACATATGGATAGACCGTTGCAGCCTCCGAGACTATGATGATGGGTTGATTGATATCACCCGAGGAAGCATGAATATCACTATTTCTAGGTGTCACTTCTCACAGCATGACAAGACAATGCTCATCGGAGCAGATCCCTCTCACATTGGCGACCGATGTATCCGTGTCACTATCCACCATTGTTTTTTCGACGGTACACGTCAACGGCATCCACGTGTTAGATATGCTCAAGTCCATCTATACAATAATTACACCAGAAACTGGGGGATCTATGCTGTCTGTGCTAGTGTAGAATCACAGATTTACTCTCAGTGCAACATATATGAAGCAGGAGCGAAAAAGGTGGCGTTTAAATATCTAACTGAAAAGGCAGCAGACAAAGAAGAACCCTCAAGTGGTTGCATATGGTCTGATGGAGACTTATTTGTAAATGGCACTCAAAGTGGGCTGTTGGCTGCAACTGCTGAACACAACTTGTTTCATCCTTCACAACATTACTCTGCTTGGACAGTGGAACCTCCAACAGATTCTCTTAAACACATTCTCCAACATTGTACTGGATGCCAAAACATTCCAAGACCAACTGATCTTCCCTTGGTACCTTAG 1134 45.15 MGNAHGHRKHFNHGVNTSPPTNNAPSPFNKYSSSEPTSRNSTSTSKMASLPYAHVDSSLRALAAQAEGFGRSAIGGLHGSVYCVTNLADDGPGSLRFGCRKKEPLWIIFEVSGTIHLSTYLSVSSYKTVDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRGSMNITISRCHFSQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRHPRVRYAQVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGAKKVAFKYLTEKAADKEEPSSGCIWSDGDLFVNGTQSGLLAATAEHNLFHPSQHYSAWTVEPPTDSLKHILQHCTGCQNIPRPTDLPLVP 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23433616 23436920 - CmPI595203_04g008910.1 Cmu04g0891 414476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0891 377 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Cmu04g0891 377 PRINTS Pollen allergen Amb family signature 65 82 IPR018082 -
Cmu04g0891 377 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Cmu04g0891 377 Pfam Pectate lyase 121 283 IPR002022 -
Cmu04g0891 377 SUPERFAMILY Pectin lyase-like 65 372 IPR011050 -
Cmu04g0891 377 SMART amb_all 77 290 IPR002022 -
Cmu04g0891 377 PANTHER PECTATE LYASE 18-RELATED 57 349 IPR045032 GO:0030570(InterPro)
Cmu04g0891 377 MobiDBLite consensus disorder prediction 1 45 - -
Cmu04g0891 377 MobiDBLite consensus disorder prediction 14 45 - -
Cmu04g0891 377 ProSiteProfiles Zinc finger integrase-type profile. 324 365 IPR003308 GO:0008270(InterPro)
Cmu04g0891 377 Gene3D - 50 358 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0891 Cmu-Chr4:23433616 Cmu08g0727 Cmu-Chr8:19623118 3.30E-40 dispersed
Cmu04g0891 Cmu-Chr4:23433616 Cmu05g2187 Cmu-Chr5:31318746 2.70E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0891 K01728 - csv:101219724 707.983