Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu04g0906 | ATGAGTGCTCATGCCGGCAGGCAGAGAGAGTTAAGAGAAACAAGTCACCACGCACAGGATGGTAATGGAAGCGTGAATAATGGTGTATCTGGCAGGGAACAGAGCCCGGTTGAGGAAAATGAGTTGAAGGTCAATGGATTAACTAGAAATACGGAGGATGGTCGAAAAAACACTGTTCATGCCCAGGAAATTCTGCAAATACAACAGCAGCAGCAGCCTCAAGGATCTATGGTCTGCTGGGAGAGATTCCTACATCTTAGGTCCCTCAAGGTTTTGCTTGTCGAAAATGATGACTCCACCCGGCATCTAGTCACTGCACTGCTTCGTAATTGCAGTTATGAAGTTATTGCGGCTGCAAATGGACTACACGCATGGAAGATGCTAGAAGATCTGACAAATCACATAGATCTTGTCCTAACAGAGGTGGTCATGCCTTGTTTCTCTGGCATTGGTCTTTTATGCAAGATTATGAACCATAAATCGAGGAAGAATATACCTGTAATCATGATGTCTTCTCATGATTCAATGGGTTTAGTCTTTAAATGTTTGTCAAAGGGTGCTGTTGATTTTTTAGTGAAGCCCATTCGGAAGAATGAACTTAAAAACCTCTGGCAACATGTTTGGAGAAGATGCCATAGTTCTAGCGGCAGTGGAAGTGAGAGTGGCACACAGACCCAAAAATCTGTGAAGTCAAAAAGTGTTGAAAAATCAGACAACAACACCGGGAGCAATGATGAAGAAGAAGACAATGAGAGCATTGGTTTCAACATTGGTGATGGAAGTGATGATGGTAGTGGCACACAGAGTTCTTGGACCAAGCAAGCTATAGAAGTTGAAAGCCCTCGACCAGTATCTGCATCAGCATGGGATCAAAAACGTGAACGTCCTGATAGTACTTGTGCTCAAGTTGTCCACTCAAATGCTGATGCATTTGCCAATAATGCTCCAATTCTCTTGACAGCAGGGTGCCAGGTGCAGAAAAAGCAACTTGAAACTGTTACCTTTGGTAAAGTTGAACTAGGCATGCACAGGAATCTTGATTTACAACTTGAACTCTCTACGGAACATCCAACCAAGCTAGTTAACAGAAAACAGAACATTAGGCTTGAGATCGGGTCCAGTGGATTCAACGAGCAGTTCAACAAAGGACATCTTGACCTCAACTCTGAGAGCCCATCCAGCAAACTGAAGTATGAGGAAACAACTGTTACTGGTCTTGCCACCAATCTTTCTGATTGTAAGATGGATGTTGCTGTGTTTGAGGCGCCAAGCAGCCATCCCAAGACCACAGACGTTAAGAATAAAGATGTTACAGATTCAGAGGATTTTCCATCCCTTGAGCTTGGATTAAAAAGGCTTAGAGGAGTTCAAACGACAGGGAAAGCGGTACAAGATGAGCGGAATGTTTTGAGACGCTCAGATTCTTCAGCTTTTTCTAGGTACAATGCTGGCTCAAATTCTAACAAGACTCCAACGGAAAATGCCGGAAGTAACTCTCCACCTGTTAATGGCTTAGAAGTTACAAATCAAGAGAACATGCAAGATATTCGATCTCATTCAAGTGGTAACCCTCCCAATCAATGCTCAAATGGAGATAGCAATAATATTGACATGGGGTCCACTACTAATAATGCATTTTCCAAGTCCGTAGTTACTAATAACAAGTCAGCAATGGCATCAACAGTCAACTGTTTGTACCCATCGGGAGCTTTCCAACCTGTTAAGAATGACAGTCAATCTGTTCCACAGCAAGCTGATGTCAATAATGTCACAACTACAACAATGCAAACTCAGTCTAATTTTGTGCACAGGGAATCTCAAATGCAGCAACTTTGTCACCCGTATGATCCCACTCATCAGCTTGTCCACAATATTCAACGATTGTCATCTGAGCATAATGATTTTTCATTAAAGAAAATATCTGCAGCTCCCACGCATTGTGGGTCAACCAATGTTTTAAATGGTACTTTAGAAGGTAATGCAGCAAACTATAGTGTGAACGGTAGCGCCTCGGGCAGTAACCATGGAAGCAATGGCCAAAATGGGAGTAGCACTGCAGTAAATGCTGGAGGGCTGAATATGGAAAGTGATAATGGAATAGGTCGAAGTGGGGATGCCAGTGGGAGTGGGAGTGGGAGTGGAAACAAAATGGACCAGAACAAAGTTTCACAAAGGGAAGCTGCCTTGACAAAGTTTCGCCAGAAAAGGAAGGAAAGATGCTTTCGTAAAAAGGTCCGATACCAAAGCAGAAAGAGATTAGCAGAACAGAGACCCCGTGTCAGGGGACAGTTTGTGAGACAAAACACGAGTGAAAACACGAGCAATGCAGGAGATGGCTAA | 2340 | 43.29 | MSAHAGRQRELRETSHHAQDGNGSVNNGVSGREQSPVEENELKVNGLTRNTEDGRKNTVHAQEILQIQQQQQPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLRNCSYEVIAAANGLHAWKMLEDLTNHIDLVLTEVVMPCFSGIGLLCKIMNHKSRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSVEKSDNNTGSNDEEEDNESIGFNIGDGSDDGSGTQSSWTKQAIEVESPRPVSASAWDQKRERPDSTCAQVVHSNADAFANNAPILLTAGCQVQKKQLETVTFGKVELGMHRNLDLQLELSTEHPTKLVNRKQNIRLEIGSSGFNEQFNKGHLDLNSESPSSKLKYEETTVTGLATNLSDCKMDVAVFEAPSSHPKTTDVKNKDVTDSEDFPSLELGLKRLRGVQTTGKAVQDERNVLRRSDSSAFSRYNAGSNSNKTPTENAGSNSPPVNGLEVTNQENMQDIRSHSSGNPPNQCSNGDSNNIDMGSTTNNAFSKSVVTNNKSAMASTVNCLYPSGAFQPVKNDSQSVPQQADVNNVTTTTMQTQSNFVHRESQMQQLCHPYDPTHQLVHNIQRLSSEHNDFSLKKISAAPTHCGSTNVLNGTLEGNAANYSVNGSASGSNHGSNGQNGSSTAVNAGGLNMESDNGIGRSGDASGSGSGSGNKMDQNKVSQREAALTKFRQKRKERCFRKKVRYQSRKRLAEQRPRVRGQFVRQNTSENTSNAGDG | 779 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 23557105 | 23563744 | - | CmPI595203_04g009060.1 | Cmu04g0906 | 414491 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu04g0906 | 779 | MobiDBLite | consensus disorder prediction | 700 | 727 | - | - | |
Cmu04g0906 | 779 | SMART | REC_2 | 89 | 204 | IPR001789 | GO:0000160(InterPro) | |
Cmu04g0906 | 779 | Pfam | Response regulator receiver domain | 91 | 202 | IPR001789 | GO:0000160(InterPro) | |
Cmu04g0906 | 779 | Pfam | CCT motif | 725 | 767 | IPR010402 | GO:0005515(InterPro) | |
Cmu04g0906 | 779 | MobiDBLite | consensus disorder prediction | 213 | 230 | - | - | |
Cmu04g0906 | 779 | MobiDBLite | consensus disorder prediction | 668 | 692 | - | - | |
Cmu04g0906 | 779 | ProSiteProfiles | CCT domain profile. | 725 | 767 | IPR010402 | GO:0005515(InterPro) | |
Cmu04g0906 | 779 | MobiDBLite | consensus disorder prediction | 459 | 541 | - | - | |
Cmu04g0906 | 779 | CDD | psREC_PRR | 91 | 194 | - | - | |
Cmu04g0906 | 779 | MobiDBLite | consensus disorder prediction | 18 | 34 | - | - | |
Cmu04g0906 | 779 | MobiDBLite | consensus disorder prediction | 668 | 779 | - | - | |
Cmu04g0906 | 779 | ProSiteProfiles | Response regulatory domain profile. | 90 | 208 | IPR001789 | GO:0000160(InterPro) | |
Cmu04g0906 | 779 | MobiDBLite | consensus disorder prediction | 474 | 541 | - | - | |
Cmu04g0906 | 779 | MobiDBLite | consensus disorder prediction | 213 | 295 | - | - | |
Cmu04g0906 | 779 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cmu04g0906 | 779 | SUPERFAMILY | CheY-like | 87 | 213 | IPR011006 | - | |
Cmu04g0906 | 779 | Gene3D | - | 88 | 336 | - | - | |
Cmu04g0906 | 779 | MobiDBLite | consensus disorder prediction | 762 | 779 | - | - | |
Cmu04g0906 | 779 | MobiDBLite | consensus disorder prediction | 735 | 750 | - | - | |
Cmu04g0906 | 779 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Cmu04g0906 | 779 | MobiDBLite | consensus disorder prediction | 261 | 276 | - | - | |
Cmu04g0906 | 779 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 75 | 356 | IPR045279 | GO:0009736(InterPro) | |
Cmu04g0906 | 779 | FunFam | Two-component response regulator-like PRR37 | 89 | 247 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g0009 | Cmu-Chr1:98951 | Cmu04g0906 | Cmu-Chr4:23557105 | 1.10E-44 | dispersed | |
Cmu04g0906 | Cmu-Chr4:23557105 | Cmu04g1247 | Cmu-Chr4:26954695 | 2.00E-12 | dispersed | |
Cmu09g1583 | Cmu-Chr9:30098009 | Cmu04g0906 | Cmu-Chr4:23557105 | 3.30E-06 | dispersed | |
Cmu04g0906 | Cmu-Chr4:23557105 | Cmu06g1276 | Cmu-Chr6:23871806 | 9.50E-18 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6014 | PF00072 | Response_reg | 2.70E-20 | CL0304 | Cmu | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu04g0906 | K12129 | - | csv:101210765 | 1352.81 |