Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0906 ATGAGTGCTCATGCCGGCAGGCAGAGAGAGTTAAGAGAAACAAGTCACCACGCACAGGATGGTAATGGAAGCGTGAATAATGGTGTATCTGGCAGGGAACAGAGCCCGGTTGAGGAAAATGAGTTGAAGGTCAATGGATTAACTAGAAATACGGAGGATGGTCGAAAAAACACTGTTCATGCCCAGGAAATTCTGCAAATACAACAGCAGCAGCAGCCTCAAGGATCTATGGTCTGCTGGGAGAGATTCCTACATCTTAGGTCCCTCAAGGTTTTGCTTGTCGAAAATGATGACTCCACCCGGCATCTAGTCACTGCACTGCTTCGTAATTGCAGTTATGAAGTTATTGCGGCTGCAAATGGACTACACGCATGGAAGATGCTAGAAGATCTGACAAATCACATAGATCTTGTCCTAACAGAGGTGGTCATGCCTTGTTTCTCTGGCATTGGTCTTTTATGCAAGATTATGAACCATAAATCGAGGAAGAATATACCTGTAATCATGATGTCTTCTCATGATTCAATGGGTTTAGTCTTTAAATGTTTGTCAAAGGGTGCTGTTGATTTTTTAGTGAAGCCCATTCGGAAGAATGAACTTAAAAACCTCTGGCAACATGTTTGGAGAAGATGCCATAGTTCTAGCGGCAGTGGAAGTGAGAGTGGCACACAGACCCAAAAATCTGTGAAGTCAAAAAGTGTTGAAAAATCAGACAACAACACCGGGAGCAATGATGAAGAAGAAGACAATGAGAGCATTGGTTTCAACATTGGTGATGGAAGTGATGATGGTAGTGGCACACAGAGTTCTTGGACCAAGCAAGCTATAGAAGTTGAAAGCCCTCGACCAGTATCTGCATCAGCATGGGATCAAAAACGTGAACGTCCTGATAGTACTTGTGCTCAAGTTGTCCACTCAAATGCTGATGCATTTGCCAATAATGCTCCAATTCTCTTGACAGCAGGGTGCCAGGTGCAGAAAAAGCAACTTGAAACTGTTACCTTTGGTAAAGTTGAACTAGGCATGCACAGGAATCTTGATTTACAACTTGAACTCTCTACGGAACATCCAACCAAGCTAGTTAACAGAAAACAGAACATTAGGCTTGAGATCGGGTCCAGTGGATTCAACGAGCAGTTCAACAAAGGACATCTTGACCTCAACTCTGAGAGCCCATCCAGCAAACTGAAGTATGAGGAAACAACTGTTACTGGTCTTGCCACCAATCTTTCTGATTGTAAGATGGATGTTGCTGTGTTTGAGGCGCCAAGCAGCCATCCCAAGACCACAGACGTTAAGAATAAAGATGTTACAGATTCAGAGGATTTTCCATCCCTTGAGCTTGGATTAAAAAGGCTTAGAGGAGTTCAAACGACAGGGAAAGCGGTACAAGATGAGCGGAATGTTTTGAGACGCTCAGATTCTTCAGCTTTTTCTAGGTACAATGCTGGCTCAAATTCTAACAAGACTCCAACGGAAAATGCCGGAAGTAACTCTCCACCTGTTAATGGCTTAGAAGTTACAAATCAAGAGAACATGCAAGATATTCGATCTCATTCAAGTGGTAACCCTCCCAATCAATGCTCAAATGGAGATAGCAATAATATTGACATGGGGTCCACTACTAATAATGCATTTTCCAAGTCCGTAGTTACTAATAACAAGTCAGCAATGGCATCAACAGTCAACTGTTTGTACCCATCGGGAGCTTTCCAACCTGTTAAGAATGACAGTCAATCTGTTCCACAGCAAGCTGATGTCAATAATGTCACAACTACAACAATGCAAACTCAGTCTAATTTTGTGCACAGGGAATCTCAAATGCAGCAACTTTGTCACCCGTATGATCCCACTCATCAGCTTGTCCACAATATTCAACGATTGTCATCTGAGCATAATGATTTTTCATTAAAGAAAATATCTGCAGCTCCCACGCATTGTGGGTCAACCAATGTTTTAAATGGTACTTTAGAAGGTAATGCAGCAAACTATAGTGTGAACGGTAGCGCCTCGGGCAGTAACCATGGAAGCAATGGCCAAAATGGGAGTAGCACTGCAGTAAATGCTGGAGGGCTGAATATGGAAAGTGATAATGGAATAGGTCGAAGTGGGGATGCCAGTGGGAGTGGGAGTGGGAGTGGAAACAAAATGGACCAGAACAAAGTTTCACAAAGGGAAGCTGCCTTGACAAAGTTTCGCCAGAAAAGGAAGGAAAGATGCTTTCGTAAAAAGGTCCGATACCAAAGCAGAAAGAGATTAGCAGAACAGAGACCCCGTGTCAGGGGACAGTTTGTGAGACAAAACACGAGTGAAAACACGAGCAATGCAGGAGATGGCTAA 2340 43.29 MSAHAGRQRELRETSHHAQDGNGSVNNGVSGREQSPVEENELKVNGLTRNTEDGRKNTVHAQEILQIQQQQQPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLRNCSYEVIAAANGLHAWKMLEDLTNHIDLVLTEVVMPCFSGIGLLCKIMNHKSRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSVEKSDNNTGSNDEEEDNESIGFNIGDGSDDGSGTQSSWTKQAIEVESPRPVSASAWDQKRERPDSTCAQVVHSNADAFANNAPILLTAGCQVQKKQLETVTFGKVELGMHRNLDLQLELSTEHPTKLVNRKQNIRLEIGSSGFNEQFNKGHLDLNSESPSSKLKYEETTVTGLATNLSDCKMDVAVFEAPSSHPKTTDVKNKDVTDSEDFPSLELGLKRLRGVQTTGKAVQDERNVLRRSDSSAFSRYNAGSNSNKTPTENAGSNSPPVNGLEVTNQENMQDIRSHSSGNPPNQCSNGDSNNIDMGSTTNNAFSKSVVTNNKSAMASTVNCLYPSGAFQPVKNDSQSVPQQADVNNVTTTTMQTQSNFVHRESQMQQLCHPYDPTHQLVHNIQRLSSEHNDFSLKKISAAPTHCGSTNVLNGTLEGNAANYSVNGSASGSNHGSNGQNGSSTAVNAGGLNMESDNGIGRSGDASGSGSGSGNKMDQNKVSQREAALTKFRQKRKERCFRKKVRYQSRKRLAEQRPRVRGQFVRQNTSENTSNAGDG 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23557105 23563744 - CmPI595203_04g009060.1 Cmu04g0906 414491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0906 779 MobiDBLite consensus disorder prediction 700 727 - -
Cmu04g0906 779 SMART REC_2 89 204 IPR001789 GO:0000160(InterPro)
Cmu04g0906 779 Pfam Response regulator receiver domain 91 202 IPR001789 GO:0000160(InterPro)
Cmu04g0906 779 Pfam CCT motif 725 767 IPR010402 GO:0005515(InterPro)
Cmu04g0906 779 MobiDBLite consensus disorder prediction 213 230 - -
Cmu04g0906 779 MobiDBLite consensus disorder prediction 668 692 - -
Cmu04g0906 779 ProSiteProfiles CCT domain profile. 725 767 IPR010402 GO:0005515(InterPro)
Cmu04g0906 779 MobiDBLite consensus disorder prediction 459 541 - -
Cmu04g0906 779 CDD psREC_PRR 91 194 - -
Cmu04g0906 779 MobiDBLite consensus disorder prediction 18 34 - -
Cmu04g0906 779 MobiDBLite consensus disorder prediction 668 779 - -
Cmu04g0906 779 ProSiteProfiles Response regulatory domain profile. 90 208 IPR001789 GO:0000160(InterPro)
Cmu04g0906 779 MobiDBLite consensus disorder prediction 474 541 - -
Cmu04g0906 779 MobiDBLite consensus disorder prediction 213 295 - -
Cmu04g0906 779 MobiDBLite consensus disorder prediction 1 17 - -
Cmu04g0906 779 SUPERFAMILY CheY-like 87 213 IPR011006 -
Cmu04g0906 779 Gene3D - 88 336 - -
Cmu04g0906 779 MobiDBLite consensus disorder prediction 762 779 - -
Cmu04g0906 779 MobiDBLite consensus disorder prediction 735 750 - -
Cmu04g0906 779 MobiDBLite consensus disorder prediction 1 55 - -
Cmu04g0906 779 MobiDBLite consensus disorder prediction 261 276 - -
Cmu04g0906 779 PANTHER TWO-COMPONENT RESPONSE REGULATOR 75 356 IPR045279 GO:0009736(InterPro)
Cmu04g0906 779 FunFam Two-component response regulator-like PRR37 89 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0009 Cmu-Chr1:98951 Cmu04g0906 Cmu-Chr4:23557105 1.10E-44 dispersed
Cmu04g0906 Cmu-Chr4:23557105 Cmu04g1247 Cmu-Chr4:26954695 2.00E-12 dispersed
Cmu09g1583 Cmu-Chr9:30098009 Cmu04g0906 Cmu-Chr4:23557105 3.30E-06 dispersed
Cmu04g0906 Cmu-Chr4:23557105 Cmu06g1276 Cmu-Chr6:23871806 9.50E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6014 PF00072 Response_reg 2.70E-20 CL0304 Cmu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0906 K12129 - csv:101210765 1352.81