Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu04g0914 | ATGTTGGACCTCAATCTCTGTATTCTCTCCGGAGATTCCTCTTCCGGTGGAACTGGTTTAAATCCCTTCAATCTTTCCGCTCCCGGAGTTCAGAGTCCCATTTCATCCTCCGTCGTCAACGCCGATCAGTCCAACGTCATTGGCGATTACGGCTCCTCTTCCAACGCTGATTGTGGGTTCACTTTCTCTTTCAGCATCCTCAACAACAGCAACGACGATCAACGCGGCCGGACTGTCGCCGGCAGGTTTTCCTCCGACGTCTATTCACAGAGGAAATGGATGGTTCAACAGTCCGTTCATCCGGCGAAAAAGGGCCGGCGAGGCCCGAAATCAAGAAGCTCCGAGTATCGTGGGGTTACGTATTATCGAAGAACAGGGAGATGGGAGTCGCATATCTGGGATAGCGGGAAACAAGTCTATTTGGGTGGTTTTGATACTGCCCATTCTGCAGCCAGGGCTTATGATCGAGCTGCAATAAAGTTTCGAGGGGTTCATGCTGATATAAATTTCAATATCAGTGACTACAGTGAAGAGATTAAACAGATGAGTAATTTTAGTAAAGAGGAGTTTGTTCATATTCTTCGAAGGCAGAGCACTGGATTTTCAAGAGGGAGTTCTAAATACAGAGGGGTTACTCTGCACAAGTGTGGGAGATGGGAGGCTCGAATGGGACAGTTCTTGGGGAAGAAGTATGTGTATCTTGGGCTGTTTGATAGTGAGATAGAGGCTGCAAGAGCATATGATAAGGCTGCCATAAAATATAATGGAAGGGAAGCTGTTACCAATTTTGATCAGAGTTCCTATGAGATGGAGATTGCTTTTGAATCTCAAAACCAAGACATGGGTGATATTGACTTGAACCTGGGCATTGCCCCTCCTTGTCCATCTGAAGACCAAAAGGACAACCTGAATGTCTGTGCTACAAATTTCTGTAGCTTAAATAAATCAGATTCTGATAGATCTGAGTTGATAATGCTTGAAAACCATTCTTCTGTGGCTGTGAGAGCACATCCTTCTTTTATGAGTTGTCCCAATTTCTTTCCTACCTACCAGGGAAGAGCAATGGAGAAGATAATGGAAGTTGAAACTTTACCGAACTGGGGGTGGCGCCAGATCCCAATCTCTTACGGCGGAGCAACTTCCGTCCCTTTCTTCTCCACTGCAGCATCATCAGGATTCCCTTCTTCTCCGGCTGCCCAGCTTCCTCCCCATCTCCTTCGTCCAGCGCCGCCGTTCCTCCGCTACCATTTTCCCCCCACTAACAGCGTTCCTCATTTCTACTGCAGCACCTGA | 1293 | 47.25 | MLDLNLCILSGDSSSGGTGLNPFNLSAPGVQSPISSSVVNADQSNVIGDYGSSSNADCGFTFSFSILNNSNDDQRGRTVAGRFSSDVYSQRKWMVQQSVHPAKKGRRGPKSRSSEYRGVTYYRRTGRWESHIWDSGKQVYLGGFDTAHSAARAYDRAAIKFRGVHADINFNISDYSEEIKQMSNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKYNGREAVTNFDQSSYEMEIAFESQNQDMGDIDLNLGIAPPCPSEDQKDNLNVCATNFCSLNKSDSDRSELIMLENHSSVAVRAHPSFMSCPNFFPTYQGRAMEKIMEVETLPNWGWRQIPISYGGATSVPFFSTAASSGFPSSPAAQLPPHLLRPAPPFLRYHFPPTNSVPHFYCST | 430 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 23629755 | 23634232 | + | CmPI595203_04g009140.1 | Cmu04g0914 | 414499 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu04g0914 | 430 | Gene3D | AP2/ERF domain | 206 | 265 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu04g0914 | 430 | Gene3D | AP2/ERF domain | 115 | 173 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu04g0914 | 430 | ProSiteProfiles | AP2/ERF domain profile. | 207 | 264 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu04g0914 | 430 | Pfam | AP2 domain | 206 | 256 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu04g0914 | 430 | Pfam | AP2 domain | 115 | 163 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu04g0914 | 430 | CDD | AP2 | 206 | 266 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu04g0914 | 430 | ProSiteProfiles | AP2/ERF domain profile. | 115 | 171 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu04g0914 | 430 | PRINTS | Ethylene responsive element binding protein signature | 246 | 266 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu04g0914 | 430 | PRINTS | Ethylene responsive element binding protein signature | 208 | 219 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu04g0914 | 430 | FunFam | AP2-like ethylene-responsive transcription factor | 206 | 266 | - | - | |
Cmu04g0914 | 430 | FunFam | AP2-like ethylene-responsive transcription factor | 114 | 173 | - | - | |
Cmu04g0914 | 430 | SMART | rav1_2 | 207 | 270 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu04g0914 | 430 | SMART | rav1_2 | 115 | 177 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu04g0914 | 430 | SUPERFAMILY | DNA-binding domain | 206 | 265 | IPR016177 | GO:0003677(InterPro) | |
Cmu04g0914 | 430 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 74 | 298 | - | - | |
Cmu04g0914 | 430 | CDD | AP2 | 114 | 173 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu04g0914 | 430 | SUPERFAMILY | DNA-binding domain | 114 | 173 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu04g0914 | Cmu-Chr4:23629755 | Cmu07g1382 | Cmu-Chr7:29152551 | 3.80E-45 | dispersed | |
Cmu10g2781 | Cmu-Chr10:34420501 | Cmu04g0914 | Cmu-Chr4:23629755 | 9.20E-104 | wgd | |
Cmu02g2070 | Cmu-Chr2:34359105 | Cmu04g0914 | Cmu-Chr4:23629755 | 1.70E-97 | wgd | |
Cmu02g1374 | Cmu-Chr2:27377319 | Cmu04g0914 | Cmu-Chr4:23629755 | 5.90E-57 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6015 | PF00847 | AP2 | 1.40E-10 | CL0081 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu04g0914 | K09284 | - | csv:101211008 | 697.582 |