Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu04g0930 | ATGTCTAAGGATGTTGAACCTGGGTTTTCCGCCGGCGACTACCTCGACCAGCCTCCGGCTCCGTTCTTCGACGCCGACGAGCTTTTGCGGTGGTCCTTTTACAGGGCCGTTATTGCTGAGTTCGTTGCAACCCTTTTGTTTCTGTACGTTGGAGTGCTCACTGTGATTGGAAACCAGAGTCAGTCTTCTGCCGCCGTATGCGCCGGCGTTGGTGTTCTGGGTATTGCTTGGGCTTTCGGCGGCACCATCTTTGTTCTCGTTTACTGCACCGCCGGCATTTCTGGCAAGTTCTGCTGCTCTCTCTCCCCTTTTGGAGGACATATAAACCCAGCAGTGACATTTGGGCTGTTTTTGGGTCGGAAGGTTTCATTGGTTAGAGCTGCACTATACATAATGGCTCAGTGTTTGGGAGCCATTTGTGGGTGTGGGTTGGTGAAGTCGTTAAAGAAGGCTAACTTCAATGCCTTCAGCGGTGGAGCCACCGAGCTCGCCGACGGCTTCAGCCCCGGTGCTGGCCTCGCCGCTGAGATCATCGGAACCTTCGTTCTTGTATACACTGTCTTCTCTGCCACCGATCCCAAAAGAAAAGCTAGAGATTCCCATGTTCCTGTTCTAGCGCCGCTCCCAATTGGGTTCGCCGTGTTCGTGGTGAATTTAGCCACGATTCCGGTCACAGGCGCCGGCATTAACCCAGCTCGAAGCTTCGGCTCTGCAGTGATGTTCAACAACCGCAAAGCTTGGGATAACCATTGGATATTTTGGGTTGGACCTTTCATTGGAGCTGCAATGGCTGCAATTTACCATGAATTTGTTTTGAGAGGAGGAGCAGCTAAGACCTTGAAATCCTTCAGAACTTCCTCAATTTAA | 867 | 51.79 | MSKDVEPGFSAGDYLDQPPAPFFDADELLRWSFYRAVIAEFVATLLFLYVGVLTVIGNQSQSSAAVCAGVGVLGIAWAFGGTIFVLVYCTAGISGKFCCSLSPFGGHINPAVTFGLFLGRKVSLVRAALYIMAQCLGAICGCGLVKSLKKANFNAFSGGATELADGFSPGAGLAAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFVVNLATIPVTGAGINPARSFGSAVMFNNRKAWDNHWIFWVGPFIGAAMAAIYHEFVLRGGAAKTLKSFRTSSI | 288 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 23758466 | 23761403 | - | CmPI595203_04g009300.1 | Cmu04g0930 | 414515 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu04g0930 | 288 | Gene3D | Glycerol uptake facilitator protein. | 20 | 288 | IPR023271 | - | |
Cmu04g0930 | 288 | SUPERFAMILY | Aquaporin-like | 27 | 273 | IPR023271 | - | |
Cmu04g0930 | 288 | ProSitePatterns | MIP family signature. | 107 | 115 | IPR022357 | - | |
Cmu04g0930 | 288 | Pfam | Major intrinsic protein | 28 | 268 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cmu04g0930 | 288 | PRINTS | Major intrinsic protein family signature | 175 | 193 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cmu04g0930 | 288 | PRINTS | Major intrinsic protein family signature | 211 | 233 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cmu04g0930 | 288 | PRINTS | Major intrinsic protein family signature | 251 | 271 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cmu04g0930 | 288 | PRINTS | Major intrinsic protein family signature | 35 | 54 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cmu04g0930 | 288 | PRINTS | Major intrinsic protein family signature | 126 | 145 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cmu04g0930 | 288 | PRINTS | Major intrinsic protein family signature | 89 | 113 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cmu04g0930 | 288 | FunFam | Probable aquaporin PIP2-8 | 20 | 288 | - | - | |
Cmu04g0930 | 288 | CDD | MIP | 35 | 271 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cmu04g0930 | 288 | NCBIfam | MIP family channel protein | 39 | 267 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cmu04g0930 | 288 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 11 | 284 | IPR034294 | GO:0005886(PANTHER)|GO:0015250(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu04g0930 | Cmu-Chr4:23758466 | Cmu04g0933 | Cmu-Chr4:23782880 | 7.30E-117 | dispersed | |
Cmu04g0930 | Cmu-Chr4:23758466 | Cmu04g0932 | Cmu-Chr4:23772236 | 1.90E-117 | proximal | |
Cmu10g2754 | Cmu-Chr10:34169189 | Cmu04g0930 | Cmu-Chr4:23758466 | 1.70E-108 | wgd | |
Cmu04g0930 | Cmu-Chr4:23758466 | Cmu08g0692 | Cmu-Chr8:19228752 | 2.70E-111 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu04g0930 | K09872 | - | csv:101215842 | 520.005 |