Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0930 ATGTCTAAGGATGTTGAACCTGGGTTTTCCGCCGGCGACTACCTCGACCAGCCTCCGGCTCCGTTCTTCGACGCCGACGAGCTTTTGCGGTGGTCCTTTTACAGGGCCGTTATTGCTGAGTTCGTTGCAACCCTTTTGTTTCTGTACGTTGGAGTGCTCACTGTGATTGGAAACCAGAGTCAGTCTTCTGCCGCCGTATGCGCCGGCGTTGGTGTTCTGGGTATTGCTTGGGCTTTCGGCGGCACCATCTTTGTTCTCGTTTACTGCACCGCCGGCATTTCTGGCAAGTTCTGCTGCTCTCTCTCCCCTTTTGGAGGACATATAAACCCAGCAGTGACATTTGGGCTGTTTTTGGGTCGGAAGGTTTCATTGGTTAGAGCTGCACTATACATAATGGCTCAGTGTTTGGGAGCCATTTGTGGGTGTGGGTTGGTGAAGTCGTTAAAGAAGGCTAACTTCAATGCCTTCAGCGGTGGAGCCACCGAGCTCGCCGACGGCTTCAGCCCCGGTGCTGGCCTCGCCGCTGAGATCATCGGAACCTTCGTTCTTGTATACACTGTCTTCTCTGCCACCGATCCCAAAAGAAAAGCTAGAGATTCCCATGTTCCTGTTCTAGCGCCGCTCCCAATTGGGTTCGCCGTGTTCGTGGTGAATTTAGCCACGATTCCGGTCACAGGCGCCGGCATTAACCCAGCTCGAAGCTTCGGCTCTGCAGTGATGTTCAACAACCGCAAAGCTTGGGATAACCATTGGATATTTTGGGTTGGACCTTTCATTGGAGCTGCAATGGCTGCAATTTACCATGAATTTGTTTTGAGAGGAGGAGCAGCTAAGACCTTGAAATCCTTCAGAACTTCCTCAATTTAA 867 51.79 MSKDVEPGFSAGDYLDQPPAPFFDADELLRWSFYRAVIAEFVATLLFLYVGVLTVIGNQSQSSAAVCAGVGVLGIAWAFGGTIFVLVYCTAGISGKFCCSLSPFGGHINPAVTFGLFLGRKVSLVRAALYIMAQCLGAICGCGLVKSLKKANFNAFSGGATELADGFSPGAGLAAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFVVNLATIPVTGAGINPARSFGSAVMFNNRKAWDNHWIFWVGPFIGAAMAAIYHEFVLRGGAAKTLKSFRTSSI 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23758466 23761403 - CmPI595203_04g009300.1 Cmu04g0930 414515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0930 288 Gene3D Glycerol uptake facilitator protein. 20 288 IPR023271 -
Cmu04g0930 288 SUPERFAMILY Aquaporin-like 27 273 IPR023271 -
Cmu04g0930 288 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Cmu04g0930 288 Pfam Major intrinsic protein 28 268 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0930 288 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0930 288 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0930 288 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0930 288 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0930 288 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0930 288 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0930 288 FunFam Probable aquaporin PIP2-8 20 288 - -
Cmu04g0930 288 CDD MIP 35 271 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0930 288 NCBIfam MIP family channel protein 39 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0930 288 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 11 284 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0930 Cmu-Chr4:23758466 Cmu04g0933 Cmu-Chr4:23782880 7.30E-117 dispersed
Cmu04g0930 Cmu-Chr4:23758466 Cmu04g0932 Cmu-Chr4:23772236 1.90E-117 proximal
Cmu10g2754 Cmu-Chr10:34169189 Cmu04g0930 Cmu-Chr4:23758466 1.70E-108 wgd
Cmu04g0930 Cmu-Chr4:23758466 Cmu08g0692 Cmu-Chr8:19228752 2.70E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0930 K09872 - csv:101215842 520.005