Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0933 ATGTCGAAGGATATTGAAGCTGGAGGGCGTGGTGGGTTTAGTGGGAAGGATTACGAAGATCCGCCGCCGGCCCCATTGATCGACGCTCAGGAGTTTGCCCAGTGGTCATTTTATAGAGCCATTATAGCAGAGTTTGTTGCTACTCTTTTGTTCTTGTATGTTACTGTTCTTACTGTCATTGGGTATAAAGTTCAGAGTGATGATAAGAATGGAGGCGAGATTTGTGGTGGCGTCGGTATTTTGGGCATTGCTTGGGCCTTTGGTGGCATGATTTTTGTTCTTGTTTACTGCACCGCCGGGATTTCTGGAGGACACATAAATCCGGCTGTGACTTTTGGGCTATTTTTGGCTCGGAAGGTATCATTAGTGAGAGCCGTTTTGTACATGGTGGCTCAGTGTCTAGGCGCCATTTGTGGCTGTGCATTGGTGAAGGCATTCCAAAACGCTCACTACAACAAGTACGGCGGAGGAGCCAACTCGCTCTCCGACGGCTATAGCACCGGCACCGGATTAGCCGCCGAGATCATCGGAACCTTCGTTCTCGTTTACACTGTCTTTTCCGCTACCGATCCCAAGAGAAATGCCAGAGACTCTCACGTCCCCGTTTTGGCTCCACTCCCAATTGGATTCGCAGTGTTTATGGTTCATTTGGCTACCATTCCGATCACCGGCACTGGCATCAACCCAGCTCGAAGCTTTGGAGCTGCCGTGATCTTTAACAAAGACAAGCCCTGGGATGATCAGTGGATCTTTTGGGTTGGGCCGTTCATTGGAGCTGCCATTGCTGCAATTTATCATCAAATCGTGTTGAGGGCAGGGGCAGTTAAAGCTCTGGGATCGTTCAGAAGTTCCACTGCCGTATGA 864 49.77 MSKDIEAGGRGGFSGKDYEDPPPAPLIDAQEFAQWSFYRAIIAEFVATLLFLYVTVLTVIGYKVQSDDKNGGEICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMVAQCLGAICGCALVKAFQNAHYNKYGGGANSLSDGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKDKPWDDQWIFWVGPFIGAAIAAIYHQIVLRAGAVKALGSFRSSTAV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23782880 23789474 + CmPI595203_04g009330.1 Cmu04g0933 414518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0933 287 MobiDBLite consensus disorder prediction 1 21 - -
Cmu04g0933 287 FunFam Probable aquaporin PIP1-2 24 285 - -
Cmu04g0933 287 Pfam Major intrinsic protein 32 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0933 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Cmu04g0933 287 CDD MIP 39 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0933 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 3 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cmu04g0933 287 NCBIfam MIP family channel protein 43 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0933 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
Cmu04g0933 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0933 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0933 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0933 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0933 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0933 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0933 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2107 Cmu-Chr2:34686464 Cmu04g0933 Cmu-Chr4:23782880 5.40E-136 dispersed
Cmu04g0566 Cmu-Chr4:19089136 Cmu04g0933 Cmu-Chr4:23782880 1.90E-11 dispersed
Cmu04g0930 Cmu-Chr4:23758466 Cmu04g0933 Cmu-Chr4:23782880 7.30E-117 dispersed
Cmu04g0933 Cmu-Chr4:23782880 Cmu05g2155 Cmu-Chr5:31031396 1.20E-132 dispersed
Cmu04g0932 Cmu-Chr4:23772236 Cmu04g0933 Cmu-Chr4:23782880 7.70E-143 tandem
Cmu04g0933 Cmu-Chr4:23782880 Cmu04g0934 Cmu-Chr4:23793699 4.90E-121 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0933 K09872 - csv:101216085 526.939