Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0934 ATGTCTAACAATGTCAAAGACTACCAAGACCCACCGCCGGCCCCCTTCATCGACGCCGGCGAGTTCATTCAATGGTCGTTTTACAGAGCCATTATCGCCGAGTTCGTCGCCACCCTTCTCTTCTTGTACATTCTTGTTCTCACTGTCATTGGCAATGCCAGCCTCTCCGCCGCCAATATCTGCGGCGGCGTCGGACTTTTGGGCATTTCCTGGGCTGTCGGCGGCATGATCTTCGTCCTCGTTTACTGCACCGCTGGAATTTCTGGTGGGCATATTAATCCGGCGGTGACGTTCGGGATGTTGTTAGCTCGAAAAATCTCTCTAATCAGAGCCTTTTTTTACATTGTGGCTCAATGTTTGGGAGCCATTTGTGGGTGTGCATTGGCTAAATCATTACAGAAGACTTATTACGTTCAATTCCAAGGTGCAGCCAATATAGTCGCCGATGGGTACAGCATCGGCACCGGCTTAGCCGCGGAGATCATCGGAACTTTTGTTCTTGTTTACACTGTCTTCTCCGCCACTGATCCCAAGAGAAACGCTAGAGATTCTCACATTCCTGTTTTGGCGCCACTCCCAATTGGGTTCGCGGTGATTATGGTTCATTTAGCCACCATTCCCATCACCGGCACCGGCATCAACCCGGCTCGAAGCTTCGGCGCTGCAGTGATCTATAACAAAGCCAAGGCCTGGGATCATCATTGGATCTTTTGGGTTGGACCATTCATTGGAGCTGCCATTGCTGCAACTTATCATGTAGTTATAATAAGGGCAGGGACAATTAAAGCTCTTGTTTCCTTCAGAAGTTCCTCTGCTCTATAA 822 49.51 MSNNVKDYQDPPPAPFIDAGEFIQWSFYRAIIAEFVATLLFLYILVLTVIGNASLSAANICGGVGLLGISWAVGGMIFVLVYCTAGISGGHINPAVTFGMLLARKISLIRAFFYIVAQCLGAICGCALAKSLQKTYYVQFQGAANIVADGYSIGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVIMVHLATIPITGTGINPARSFGAAVIYNKAKAWDHHWIFWVGPFIGAAIAATYHVVIIRAGTIKALVSFRSSSAL 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23793699 23794890 + CmPI595203_04g009340.1 Cmu04g0934 414519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0934 273 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 269 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cmu04g0934 273 CDD MIP 29 255 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0934 273 ProSitePatterns MIP family signature. 91 99 IPR022357 -
Cmu04g0934 273 Pfam Major intrinsic protein 23 252 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0934 273 Gene3D Glycerol uptake facilitator protein. 14 273 IPR023271 -
Cmu04g0934 273 FunFam Probable aquaporin PIP1-2 14 271 - -
Cmu04g0934 273 NCBIfam MIP family channel protein 33 251 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0934 273 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0934 273 PRINTS Major intrinsic protein family signature 110 129 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0934 273 PRINTS Major intrinsic protein family signature 73 97 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0934 273 PRINTS Major intrinsic protein family signature 235 255 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0934 273 PRINTS Major intrinsic protein family signature 29 48 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0934 273 PRINTS Major intrinsic protein family signature 195 217 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0934 273 SUPERFAMILY Aquaporin-like 21 257 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0934 Cmu-Chr4:23793699 Cmu10g2754 Cmu-Chr10:34169189 1.60E-113 dispersed
Cmu04g0933 Cmu-Chr4:23782880 Cmu04g0934 Cmu-Chr4:23793699 4.90E-121 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0934 K09872 - csv:101215604 501.13