Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0937 ATGCCTACTTCTAGTAGATGGAGATCAGTGACCACAGTAAGATTCGAAGACGAAGAACTCGAAAATGGCGAAGCAGGGAGGAGGAGAAAGAGAGGAAGAAGGAAATGTGAGGGAATGTTTTGTGATTCAGATCAAGATTATGATGTGGTGAAGGGAATGGTACTAGATCCAAATCTGCCCATACTGAACAAATGGAATAGGGTTTTTCTGGTGGCTTGTTTGGTGTCACTATTTGTGGACCCTGTGTTCTTCTTCTTGCCGGTGGTGAACGTGGAGGAGGGGTGCGTGGAAATGAGCGGAGCGTTGGGGGTGGCGTTGACGGTGGTCCGGTCGATTGCGGATGTGTTCTACATAACACACATACTGGTTAGGTTTAGGACAGCTTACGTAGCTCCCTCGTCCAGGATCTTTGGAAGAGGAGAGCTCGTGATTCACCCTTCTAAGATTGCTGCTAACTATCTCGTTTTCGAGTTTTGGCTTCATTTTGTTGCTGCATTACCTCTTCCACAGGCATTCGTATGGGTTGCAATACCAAAAATGAGGGCGTGGAGTTACTTTGTTCGTTTCTCCATTTTGTTACAATACCTTCTGAGGTTGTATCTCATCTTCCCTTTATCTGATCAAATCATTAAGGCCACTGGAGTTTTGATGAAAACAGCTTGGGTTGGAGCTGGTTATAACCTAATGCTCTTTATGCTAGCAAGCCATGTTTTGGGATCATGTTGGTACCTTTTATCCATAGGAAGACAAATGGAATGCTGGAAAAAAGTGTGCAATTTGGGGCAGCATTTGGATTGCCAATATGAGCTTTTTTATTGTAAAGCTTTACAGAGAGATTCAAATAAAGCTGCTTGGTTTCAACATTATCAAGCAACCAATATTTCAAATTTATGTCATCCAAGTGCCACCAATTTCTTTCACTTTGGGATCTTTTCTGATTCTTTTGCTTCAACTTCTTCCCCCTTCTTCACTAGGTACTTGTATTGTTTCTGGTGGGGATTGAGGAATTTAAGCTCTCTAGGACAAAATTTGCTAACAAGTAGCAATGTGGGAGAAATCAATTTCGCCATTGTGATTGCCATTGTTGGGTTGGTGCTTTTCGCTCTTCTTATTGGAAATATGCAAACTTATCTCCAATCAACGACATTAAGACTAGAAGAATGGAGAGTAAGAAGAAGAGACACGGAGCAATGGATGCAACACAGACAATTACCAAATCAATTAAAACAAAGCGTAAGAAATTACGAACAATTCCGATGGATGGCAACTCACGGCGTCGACGAACAACACATTCTAAAATCCCTTCCTCTCGATCTCCGACGACAAATCAAACGCCATCTCTGTCTCGATCTCCTCCGTCAAGTTCCTCTGTTCGACGAAATGGAAGAAAGAATGTTAGACGCAATTTGCGAGCGATTAAAACCCTGTTTGAGCACTTCCAACACTTGTTTACTTCGAGAAGGCGACCCAGTTAATGAAATGTTGTTTATAATCCGTGGCCATCTGGATTCCCACACCACCAACGGCGGCCGGACTGGGTTTTTCAATTCGAGCCGTCTTGGGCCGAGTGATTTCTGCGGTGAGGAGTTGCTTCCTTGGGCGTTGGATGATCCTGGGGCGGCAGCGGTGTTGCCGTCTTCCACGAGGACGGTGACGGCGGTGACGGAGGTGGAAGGGTTTGCGCTTGTGGCGGAGGATTTGAAGTTTGTGGCAGCGCAATTTCGGAGGCTGCATAGTAAGCAGATTAGGTGTACTTTTAGGTTTCACTCGCAGCAGTGGAGGACGTGGGCGGCGTGTTTTATTCAGGCGGCGTGGGTTAGGTATAAGCGGCGGCAGAAGAAGGAAGGTGAGATTAATGTTGTGAGGAAGATGAGTGTTGTTCGTCATAGGTCGTTGGTGAAGCCGCTTCAAATTGATTTCTCGGTGGAAGATAGATGA 1938 45.1 MPTSSRWRSVTTVRFEDEELENGEAGRRRKRGRRKCEGMFCDSDQDYDVVKGMVLDPNLPILNKWNRVFLVACLVSLFVDPVFFFLPVVNVEEGCVEMSGALGVALTVVRSIADVFYITHILVRFRTAYVAPSSRIFGRGELVIHPSKIAANYLVFEFWLHFVAALPLPQAFVWVAIPKMRAWSYFVRFSILLQYLLRLYLIFPLSDQIIKATGVLMKTAWVGAGYNLMLFMLASHVLGSCWYLLSIGRQMECWKKVCNLGQHLDCQYELFYCKALQRDSNKAAWFQHYQATNISNLCHPSATNFFHFGIFSDSFASTSSPFFTRYLYCFWWGLRNLSSLGQNLLTSSNVGEINFAIVIAIVGLVLFALLIGNMQTYLQSTTLRLEEWRVRRRDTEQWMQHRQLPNQLKQSVRNYEQFRWMATHGVDEQHILKSLPLDLRRQIKRHLCLDLLRQVPLFDEMEERMLDAICERLKPCLSTSNTCLLREGDPVNEMLFIIRGHLDSHTTNGGRTGFFNSSRLGPSDFCGEELLPWALDDPGAAAVLPSSTRTVTAVTEVEGFALVAEDLKFVAAQFRRLHSKQIRCTFRFHSQQWRTWAACFIQAAWVRYKRRQKKEGEINVVRKMSVVRHRSLVKPLQIDFSVEDR 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23814588 23818659 + CmPI595203_04g009370.1 Cmu04g0937 414522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0937 645 CDD CAP_ED 457 577 IPR000595 -
Cmu04g0937 645 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 44 618 - -
Cmu04g0937 645 SUPERFAMILY cAMP-binding domain-like 387 578 IPR018490 -
Cmu04g0937 645 Pfam Ion transport protein 67 384 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu04g0937 645 Gene3D - 69 381 - -
Cmu04g0937 645 Gene3D Helix hairpin bin 385 448 - -
Cmu04g0937 645 SUPERFAMILY Voltage-gated potassium channels 64 379 - -
Cmu04g0937 645 FunFam Cyclic nucleotide-gated ion channel 1 384 448 - -
Cmu04g0937 645 FunFam Cyclic nucleotide-gated ion channel 1 455 574 - -
Cmu04g0937 645 PRINTS EAG/ELK/ERG potassium channel family signature 121 130 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu04g0937 645 PRINTS EAG/ELK/ERG potassium channel family signature 233 243 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu04g0937 645 PRINTS EAG/ELK/ERG potassium channel family signature 370 379 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu04g0937 645 PRINTS EAG/ELK/ERG potassium channel family signature 352 363 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu04g0937 645 PRINTS EAG/ELK/ERG potassium channel family signature 420 427 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu04g0937 645 SMART cnmp_10 457 589 IPR000595 -
Cmu04g0937 645 ProSiteProfiles cAMP/cGMP binding motif profile. 457 543 IPR000595 -
Cmu04g0937 645 Gene3D Jelly Rolls 455 576 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2116 Cmu-Chr2:34818522 Cmu04g0937 Cmu-Chr4:23814588 1.40E-215 dispersed
Cmu04g0937 Cmu-Chr4:23814588 Cmu06g1352 Cmu-Chr6:24717597 6.30E-177 dispersed
Cmu04g0937 Cmu-Chr4:23814588 Cmu10g2195 Cmu-Chr10:28034987 1.10E-173 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0937 K05391 - csv:101221856 1050.81