Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0940 ATGATTACGTTTATGGATTCGAAAGAGAAATTGAAAGAGGTGGAGAAATGTTTAGATCCTCAGTTATGGCATGCTTGTGCTGGAGGAATGGTTCAAATGCCGCCGGTGAACGCCAGGGTTTTCTATTTTCCACAAGGCCATGCGGAGCATTCTTGTGCTCCAGTTGATTTCAGGAACTGTCCTAAGGTTCCTTCATATACCCTATGCAGAGTTTCTGCCATCAAGTTCCTTGCAGATCCTGACACTGATGAAGTGTTTGCTAAACTTAGGTTGATTCCCATAAATGGAAATGAACTAGATTTTGAAGATGATGGAATTGGGAGGCTTAATGGGTCTGAACAAGATAAGCCAACTTCATTTGCAAAGACACTGACTCAATCTGATGCTAACAATGGTGGGGGTTTCTCTGTTCCAAGGTATTGTGCAGAAACCATCTTCCCTCGGTTGGATTATTCTGCTGATCCACCTGTTCAGACCATTCTTGCCAAGGATGTTCATGGCGAGACATGGAAATTCAGGCACATTTACCGAGGGACGCCTCGCCGGCATCTTTTGACTACTGGCTGGAGTACTTTTGTTAATCATAAGAAGCTTGTTGCTGGTGATTCCATTGTTTTTTTGAGGGCAGAAAATGGAGATCTCTGTGTCGGGATTAGACGGGCGAAAAGGGGAATCGGGGATGGACCGGAGTCGTCATGTGGATGGAATCCAGCAGGTGGCAACTGTGCTGTCCCATATGGAGCGTTCTCCTCATTTTTGAGGGAAGATGACAACAGATTGACGAGGTCTGCTAATGGCATGAATGGAAATGGAAGTCTTATGGGAAAGGGGAAAGTGAAGCCTGAATCAGTTATTGAAGCTGCTACACTTGCTGCAAATGGACAACCCTTTGAAATAGTATTCTATCCAAGAGCTAGTACTCCTGAATTCTGCGTCAAGGCAGCACTGGTTAAAGCAGCATTGCAGATCCGGTGGTGCTCAGGTATGAGGTTCAAGATGGCCTTTGAAACCGAGGACTCTTCACGAATTAGCTGGTTCATGGGTACCATCAATTCGGTTCAGGTTTCTGACCCACTGCGCTGGCCTGAGTCACCATGGAGGCTTCTTCAGGTTACATGGGATGAACCAGATTTACTTCAGAATGTGAAACGCGTTAGCCCATGGTTGGTTGAATTGGTATCAAACATGTCTCCAATTCACCTAGCCCCCTTCTCACCACCAAGGAAAAAGCTCAGATATCCACAACACCCTGATTTCCCTCTCGATAACCAACCTCCTGTGCCATCGTTCTCTAGTTATCTCCATGGGACTGGCAGCCCCTTCGGTTGTCCTCCCGACAACAACCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTTTGGTCTATCCTTGTCAGATTTTCATCTCAGTAAACTGCAGTCAGGTCTGTTTTCGATTGGTTATCGATCACTGGATCCAGCTGCTGGATCAACTAGACTTTCTGGTAATGCAATGACTGAAAAACCAAGTATGAGTGAAAACGTATCTTGCTTGCTAACCATGGCACATTCTACTCAAGCTTCAAAGAAATTTGACGGCGTAAAGACTCCTCAACTAATACTTTTTGGCCGACCCATACTTACAGAATTGCAGATGTCCCAAAGCTTCTCCGGCGATACGGTTTCTCCAGTTAATACTGGAAATAGTTCATCAGATGGAAATGGAGACAAAACGGCAAATTTCTCCGATGGCTCTGGATCTGCTTTACATCAACAAGGTCTACCAGAAGGCTCGGCTTGCGAAAATTTCCAATGGTACAAGGACAATCGCCAAGAAATCGAGCCTATCTTGGATACCGGCCACTGTAAAGTCTTTATGGAATCAGAAGATGTAGGTCGCACCCTCGATCTTTCTTCACTTGGGTCTTATGAAGAATTGTACAGAAAACTTGGAAATATGTTTGGTATAGATAATTCAGAGACATTGAATCATGTCTTGTACCGTGATGTTTCCGGTGCTGTCAAGCATGTTGGTGACGAACAATTCAGTGACTTCATCAAGACAGCCAGAAGATTGACAATTCTAACAGATTCAGGAAGTAACAATGTAGGAGCTTAG 2097 45.02 MITFMDSKEKLKEVEKCLDPQLWHACAGGMVQMPPVNARVFYFPQGHAEHSCAPVDFRNCPKVPSYTLCRVSAIKFLADPDTDEVFAKLRLIPINGNELDFEDDGIGRLNGSEQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGDGPESSCGWNPAGGNCAVPYGAFSSFLREDDNRLTRSANGMNGNGSLMGKGKVKPESVIEAATLAANGQPFEIVFYPRASTPEFCVKAALVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTINSVQVSDPLRWPESPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMSPIHLAPFSPPRKKLRYPQHPDFPLDNQPPVPSFSSYLHGTGSPFGCPPDNNPAGMQGARHAHFGLSLSDFHLSKLQSGLFSIGYRSLDPAAGSTRLSGNAMTEKPSMSENVSCLLTMAHSTQASKKFDGVKTPQLILFGRPILTELQMSQSFSGDTVSPVNTGNSSSDGNGDKTANFSDGSGSALHQQGLPEGSACENFQWYKDNRQEIEPILDTGHCKVFMESEDVGRTLDLSSLGSYEELYRKLGNMFGIDNSETLNHVLYRDVSGAVKHVGDEQFSDFIKTARRLTILTDSGSNNVGA 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23861307 23863726 + CmPI595203_04g009400.1 Cmu04g0940 414525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0940 698 MobiDBLite consensus disorder prediction 550 586 - -
Cmu04g0940 698 Pfam Auxin response factor 287 370 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cmu04g0940 698 Gene3D - 118 222 IPR015300 -
Cmu04g0940 698 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 694 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cmu04g0940 698 Gene3D - 324 398 - -
Cmu04g0940 698 SUPERFAMILY DNA-binding pseudobarrel domain 114 226 IPR015300 -
Cmu04g0940 698 FunFam Auxin response factor 118 222 - -
Cmu04g0940 698 FunFam Auxin response factor 325 398 - -
Cmu04g0940 698 MobiDBLite consensus disorder prediction 550 585 - -
Cmu04g0940 698 CDD B3_DNA 119 220 IPR003340 GO:0003677(InterPro)
Cmu04g0940 698 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677(InterPro)
Cmu04g0940 698 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677(InterPro)
Cmu04g0940 698 Gene3D - 611 696 - -
Cmu04g0940 698 ProSiteProfiles PB1 domain profile. 612 692 IPR053793 -
Cmu04g0940 698 SMART B3_2 120 222 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2113 Cmu-Chr2:34766490 Cmu04g0940 Cmu-Chr4:23861307 2.50E-265 dispersed
Cmu04g0940 Cmu-Chr4:23861307 Cmu08g1028 Cmu-Chr8:22575057 1.50E-94 dispersed
Cmu02g2094 Cmu-Chr2:34577424 Cmu04g0940 Cmu-Chr4:23861307 1.60E-63 wgd
Cmu04g0940 Cmu-Chr4:23861307 Cmu08g0698 Cmu-Chr8:19268658 1.50E-211 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6018 PF02362 B3 1.50E-21 CL0405 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0940 K14486 - csv:101217039 1394.02