Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0943 ATGGCGGAATCCGGTCACCAAAATGGCTTCGAGTTTTGCATCGGCGGCCGGAACAACATCAACCATGATCCATTGAATTGGGGAGTGGCGGCGGAGTCGTTGAAGGGAAGCCATTTGGAAGAAGTGAAGCGGATGGTGGAAGAATACCGGCGGCCGGTGGTGAAGCTGGGAGGAGAGACGCTGACGATATCTCAGGTGGCAGCGATCGCCGCCAAGGATTCCGGCGTGGCGGTGGAGCTGTCGGAGTCGGCGAGAGGCGGCGTTGAGGCCAGCAGTAAGTGGGTGATGGACAGCATGAATCAAGGGACTGATAGCTACGGCGTCACCACCGGCTTCGGCGCCACCTCCCACCGCCGGACTAAAGAAGGTGGCGCTCTGCAGAGGGAGCTCATACGATTTTTGAACTCGGGAATATTTGGAAATGGCATTGAATCAAGTCACACTTTGCCTCACTCAGCAACGAGAGCAGCCATGTTGGTTAGAATTAACACTCTCCTTCAAGGCTACTCGGGCATTAGGTTTGAAATTTTGGAAGCCATAACCAAACTTCTCAACCACAACATCACCCCATGTTTGCCACTTCGAGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTTACTGGCCGACCGAACTCTAAAGCTATTGGTCCAAATGGAGAAAGTCTTGATGCGAAGGAGGCTTTCAAACAAGCTGGTATTTCGTCTGGGTTTTTTGAGTTGCAACCTAAGGAAGGGTTGGCTCTCGTCAATGGGACTGCTGTTGGTTCGGGGTTAGCATCTATTGTTCTTTTTGAGGCAAACATTTTGGCAGTTTTAGCTGAGATTTTGTCGGCTATTTTTGCAGAGGTTATGCAAGGAAAGCCTGAATTTACAGATCATTTGACACACAAGTTAAAGCATCATCCTGGTCAGATTGAGGCAGCTGCAATCATGGAACACATTTTGGATGGAAGTTGTTATGTTAAAGAAGCTAAAAAATTGCATGAAATTGATCCTCTTCAGAAGCCAAAACAAGATCGCTACGCTCTTAGAACGTCACCTCAATGGCTTGGTCCATTGATTGAGGTCATTAGATTTTCTACCAAGTCAATTGAGCGAGAGATTAATTCAGTTAATGATAATCCTTTGATTGACGTTTCAAGGAACAAGGCTTTACATGGAGGGAACTTCCAGGGAACGCCAATCGGTGTCTCGATGGACAACACTCGCTTGGCTATAGCTTCGATTGGTAAGCTCATTTTCGCTCAATTTTCTGAGCTTGTTAATGATTTCTACAACAATGGTCTACCTTCAAATCTCTCTGCCAGTAGAAACCCAAGTTTAGATTATGGATTCAAAGGTACCGAAATTGCTATGGCTTCCTATTGCTCCGAGCTTCAATATTTAGCCAACCCAGTAACAAGCCATGTCCAAAGTGCTGAGCAACATAATCAAGATGTTAACTCTCTTGGTTTAATCTCCTCGAGAAAAACAGAAGAAGCCATTGACATTTTGAAACTCATGTCTTCAACATTTTTAGTTGCACTTTGCCAAGCAATTGACTTAAGGCATTTGGAAGAAAATTTAAAGAGCACAGTGAAAAACACAATAAGCCAAGTGGTCAAGAAGGTCCTTACCACCGATGCTAATGGAGCTCTCCACCCATCAAGATTTTGTGAGAAGGATTTACTCAAAATTGTTGATAGAGAATACACCTTTGCTTACATTGATGACCCATGCAGTGCCACTTATCCGTTAATGCAGAAGTTAAGACAAGTTCTTGTAGAGCATGCACTTGCAAATGGAGAAGATGAGAAGAACCCAAATAGTTCAATCTTTCAAAAGATTGGTGTTTTTGAAGAGGAACTAAAAGCTGTTTTGCCCAAGGAGGTAGAAAGTGCAAGGTTTGCTTATGAAAATGGGAACTTTACCGTTCAAAATCAAATTAAGGAATGTCGGTCATATCCACTCTACAAGTTTGTGAGAACTGAGTTAGGAACTGAGTTACTTACAGGAGAGAAGGTAAAATCTCCTGGAGAAGTGTGCGAGAAAGTGTTTATCGCATTATGTCAAGGAAAGATGATTGACCCAATTTTAGAGTGTTTAAAAGAGTGGAATGGTGCTCCAATCCCTATTTGCTAA 2145 43.96 MAESGHQNGFEFCIGGRNNINHDPLNWGVAAESLKGSHLEEVKRMVEEYRRPVVKLGGETLTISQVAAIAAKDSGVAVELSESARGGVEASSKWVMDSMNQGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNSGIFGNGIESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGESLDAKEAFKQAGISSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLAEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSCYVKEAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGTEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTEEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTISQVVKKVLTTDANGALHPSRFCEKDLLKIVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALANGEDEKNPNSSIFQKIGVFEEELKAVLPKEVESARFAYENGNFTVQNQIKECRSYPLYKFVRTELGTELLTGEKVKSPGEVCEKVFIALCQGKMIDPILECLKEWNGAPIPIC 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23909135 23912151 + CmPI595203_04g009430.1 Cmu04g0943 414528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0943 714 Gene3D Fumarase/aspartase (Central domain) 261 709 - -
Cmu04g0943 714 PANTHER HISTIDINE AMMONIA-LYASE 20 714 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cmu04g0943 714 FunFam Phenylalanine ammonia-lyase 16 260 - -
Cmu04g0943 714 SUPERFAMILY L-aspartase-like 23 714 IPR008948 GO:0003824(InterPro)
Cmu04g0943 714 NCBIfam phenylalanine ammonia-lyase 23 704 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cmu04g0943 714 Gene3D - 14 260 IPR024083 -
Cmu04g0943 714 Pfam Aromatic amino acid lyase 61 537 IPR001106 -
Cmu04g0943 714 FunFam Phenylalanine ammonia-lyase 527 648 - -
Cmu04g0943 714 Gene3D - 527 648 IPR023144 -
Cmu04g0943 714 CDD PAL-HAL 59 524 IPR001106 -
Cmu04g0943 714 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 196 212 IPR022313 GO:0016841(InterPro)
Cmu04g0943 714 FunFam Phenylalanine ammonia-lyase 261 571 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0943 Cmu-Chr4:23909135 Cmu04g0945 Cmu-Chr4:23925455 0.00E+00 dispersed
Cmu04g0943 Cmu-Chr4:23909135 Cmu04g0944 Cmu-Chr4:23918451 0.00E+00 tandem
Cmu03g2126 Cmu-Chr3:29679235 Cmu04g0943 Cmu-Chr4:23909135 1.50E-235 transposed
Cmu02g2120 Cmu-Chr2:34875763 Cmu04g0943 Cmu-Chr4:23909135 0.00E+00 wgd
Cmu04g0943 Cmu-Chr4:23909135 Cmu08g0703 Cmu-Chr8:19363888 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0943 K10775 - csv:101217907 1349.34