Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0944 ATGGCACCCGTTGATCAAACCAATGATAGCTTTTGCGCCATTACTACTCATCCTGACCCACTAAATTGGGGTTTGGCTGCTGATTCCCTCAAGGGAAGCCATCTCAATGAGGTGAAGCGCATGGTCGAAGAGTATCGGAGGCCTCTTGTCAAGCTTGGTGGTGAAACTCTTACCATTTCTCAAGTGGCTGCTATTGCTACTCGGGATTCTGATGTTACTGTTGAGCTTTCTGAGTCTGCTAGAGCTGGTGTTAAGGCTAGTAGTGATTGGGTTATGGAGAGTATGAATAAAGGAACTGATAGTTATGGTGTAACTACTGGGTTTGGTGCTACATCTCATAGAAGGACCAAGCAAGGTGGTGCTCTTCAGAAGGAGTTGATTAGATTTTTGAATGCTGGGATTTTTGGAAGTGGAGCTGAATCTGATCATACTTTGCCTCATTCGGCTACGAGGGCGGCTATGTTGGTGAGGATCAACACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATTACCCAACTTTTGAACCATAATATCACTCCATGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGGCCGAATTCTAAAGCTGTTGGTCCAAATGGAGAAAGTCTTGATGCAAAGGAGGCTTTCCAACATGCTGGTATTCCATCTGGGTTCTTTGAGTTGCAACCTAAGGAAGGGCTGGCTCTTGTCAATGGCACAGCTGTTGGTTCTGGATTGGCTTCTATTGTTCTCTTTGAGGCAAATATTTTGGCTGTTCTGTCTGAGATTTTGTCTGCCATATTTGCTGAAGTTATGCAAGGCAAGCCTGAATTTACCGACCATTTGACCCATAAGCTGAAGCATCATCCTGGCCAGATTGAGGCAGCTGCAATCATGGAACACATTTTGGATGGGAGTTCTTACATGAAAACAGCCAAGAAGTTGCACGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGCTACGCCCTTAGAACTTCACCCCAGTGGTTAGGTCCATTGATTGAAGTGATTCGGTTCTCAACAAAATCGATTGAGCGGGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGCCTGGCTATTGCTTCAATTGGAAAACTCATTTTTGCTCAATTTTCAGAGCTTGTCAATGATTTCTACAATAATGGATTACCCTCAAATCTCTCTGCAAGCAGAAACCCGAGTTTGGATTATGGATTCAAAGGTGCTGAGATTGCCATGGCTTCCTATTGCTCTGAGCTTCAATATCTAGCGAATCCTGTAACTAGTCATGTCCAAAGTGCTGAGCAACATAATCAAGATGTCAACTCTCTCGGTTTGATCTCTTCAAGAAAAACAGCTGAGGCTATTGACATTTTGAAGCTCATGTCATCCACATTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGACATTTGGAAGAAAACCTGAAGAATGTAGTGAAGAACACAGTAAGTCAAGTGGCTAAAAAAGTTCTCACCACCGGTGCTAATGGTGCACTTCACCCATCAAGATTTTGTGAAAAAGATTTATTGAAAGTGGTCGACAGAGAATATACCTTTGCCTATGTCGATGATGCGTGCAGTGCGACTTACCCATTGATGCAAAAACTAAGACAAGTTCTTGTTGAACATGCTCTGGGAAATGGTGAAGATGAAAAGAATGTAAACACTTCAGTTTTTCAAAGGATTGGAGTTTTTGAGGAGGAATTGAAAGCCATCTTGCCGAAAGAAGTAGAAAATGCAAGACTCTCCTATGAAAATGGAACGTCCACCATTGAAAACCAAATTAAAGAATGCAGATCTTATCCGCTATACAAGTTTGTGAGGGAGGAGTTGGGAACTGGGTTGTTGACTGGAGAGAGGGTGGTATCTCCAGGAGAAGAGTGTGAAAAAGTATTCACAGCTCTTTGCCAAGGAAAGATGATTGATCCAATTTTAGAGTGTTTGAAGGAGTGGAATGGTGCTCCAATCCCCATTTACTAG 2133 43.04 MAPVDQTNDSFCAITTHPDPLNWGLAADSLKGSHLNEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVTVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITQLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAKEAFQHAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNVVKNTVSQVAKKVLTTGANGALHPSRFCEKDLLKVVDREYTFAYVDDACSATYPLMQKLRQVLVEHALGNGEDEKNVNTSVFQRIGVFEEELKAILPKEVENARLSYENGTSTIENQIKECRSYPLYKFVREELGTGLLTGERVVSPGEECEKVFTALCQGKMIDPILECLKEWNGAPIPIY 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23918451 23920583 + CmPI595203_04g009440.1 Cmu04g0944 414529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0944 710 PANTHER HISTIDINE AMMONIA-LYASE 17 709 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cmu04g0944 710 FunFam Phenylalanine ammonia-lyase 11 256 - -
Cmu04g0944 710 Pfam Aromatic amino acid lyase 57 535 IPR001106 -
Cmu04g0944 710 FunFam Phenylalanine ammonia-lyase 523 644 - -
Cmu04g0944 710 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 192 208 IPR022313 GO:0016841(InterPro)
Cmu04g0944 710 SUPERFAMILY L-aspartase-like 19 709 IPR008948 GO:0003824(InterPro)
Cmu04g0944 710 FunFam Phenylalanine ammonia-lyase 257 559 - -
Cmu04g0944 710 NCBIfam phenylalanine ammonia-lyase 19 700 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cmu04g0944 710 Gene3D - 11 256 IPR024083 -
Cmu04g0944 710 Gene3D Fumarase/aspartase (Central domain) 257 705 - -
Cmu04g0944 710 CDD PAL-HAL 55 520 IPR001106 -
Cmu04g0944 710 Gene3D - 523 644 IPR023144 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0944 Cmu-Chr4:23918451 Cmu04g0946 Cmu-Chr4:23930214 0.00E+00 dispersed
Cmu04g0943 Cmu-Chr4:23909135 Cmu04g0944 Cmu-Chr4:23918451 0.00E+00 tandem
Cmu04g0944 Cmu-Chr4:23918451 Cmu04g0945 Cmu-Chr4:23925455 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0944 K10775 - csv:101218144 1358.58