Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0945 ATGGCATCTTTTCAAAAGATTGAAGACAACCTGTGCCATGGCCATAGTGATCCACTAAATTGGGGTTTGGCTGCTGATTCCCTCAAGGGAAGCCATCTCGATGAGGTGAAGCGCATGGTCGAAGAGTATCGAAGGCCTCTTGTCAAGCTTGGTGGTGAAACTCTTACCATTTCTCAAGTGGCTGCTATTGCTACTCGGGATTCTGATGTTACTGTTGAGCTTTCTGAGTCTGCTAGAGCTGGTGTTAAGGCTAGTAGTGATTGGGTTATGGAGAGTATGAATAAAGGAACTGATAGTTATGGTGTAACTACTGGGTTTGGTGCTACATCTCATAGAAGGACCAAGCAAGGTGGTGCTCTTCAGAAGGAGTTGATTAGATTTTTGAATGCTGGGATTTTTGGAAGTGGAGCTGAATCTGATCATACTTTGCCTCATTCGGCTACGAGGGCGGCTATGTTGGTGAGGATCAACACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATTACCCAACTTTTGAACCATAATATCACTCCATGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGGCCGAATTCTAAAGCTGTTGGTCCAAATGGAGAAAGTCTTGATGCAAAGGAGGCTTTCCAACATGCTGGTATTCCATCTGGGTTCTTTGAGTTGCAACCTAAGGAAGGGCTGGCTCTTGTCAATGGCACAGCTGTTGGTTCTGGATTGGCTTCTATTGTTCTCTTTGAGGCAAATATTTTGGCTGTTCTGTCTGAGATTTTGTCTGCCATATTTGCTGAAGTTATGCAAGGCAAGCCTGAATTTACCGACCATTTGACCCATAAGCTGAAGCATCATCCTGGCCAGATTGAGGCAGCTGCAATCATGGAACACATTTTGGATGGGAGTTCTTACATGAAAACAGCCAAGAAGTTGCACGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGCTACGCCCTTAGAACTTCACCCCAGTGGTTAGGTCCATTGATTGAAGTGATTCGGTTCTCAACAAAATCGATTGAGCGGGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGCCTGGCTATTGCTTCAATTGGAAAACTCATTTTTGCTCAATTTTCAGAGCTTGTCAATGATTTCTACAATAATGGATTACCCTCAAATCTCTCTGCAAGCAGAAACCCGAGTTTGGATTATGGATTCAAAGGTGCTGAGATTGCCATGGCTTCCTATTGCTCTGAGCTTCAATATCTAGCGAATCCTGTAACTAGTCATGTCCAAAGTGCTGAGCAACATAATCAAGATGTCAACTCTCTCGGTTTGATCTCTTCAAGAAAAACAGCTGAGGCTATTGACATTTTGAAGCTCATGTCATCCACATTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGGCACCTAGAAGAGAACTTGAAGAACACAGTTAAAAATACAGTGAGCCAAGTGGCGAAGAAAGTCCTCACAACTAGCTCAAATGGCACACTTCATCCTTCAAGATTTTGCGAGAAAGATTTACTCAAAGTGGTTGATAGAGAATACACTTTTGCTTACATTGACGATCCATGCAGTGCTACTTATCCATTAATGCAAAAGTTAAGACAAGTTATTGTTGAGCATGCTTTGAATAATGGAGAGGACGAAAAAGACCTAAGTACTTCAATCTTTCAAAAAATTGGAACCTTTGAAGAGGAATTGAAGACCATTTTGCCTAAAGAAGTCGAAAGTGTCAGATTGGCATATGAAAATGGAGATGCAACCATTGAGAACCAAATTAAGGAATGCAGATCTTACCCATTATACAAGTTTGTGAGGGAAGAGTTGGGCACTAACTTGTTAACCGGGGAGAAAGTTATATCTCCAGGAGAAGAGTGCGAAAAGGTTTTTACTGCATTGTGTCAAGGAAAGATGATTGATCCTATTTTAGAATGCTTGAAGGAATGGAATGGGGCTCCAATTCCCATATGTTAA 2127 42.31 MASFQKIEDNLCHGHSDPLNWGLAADSLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVTVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITQLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAKEAFQHAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKKVLTTSSNGTLHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVIVEHALNNGEDEKDLSTSIFQKIGTFEEELKTILPKEVESVRLAYENGDATIENQIKECRSYPLYKFVREELGTNLLTGEKVISPGEECEKVFTALCQGKMIDPILECLKEWNGAPIPIC 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23925455 23927581 + CmPI595203_04g009450.1 Cmu04g0945 414530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0945 708 CDD PAL-HAL 53 518 IPR001106 -
Cmu04g0945 708 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 190 206 IPR022313 GO:0016841(InterPro)
Cmu04g0945 708 PANTHER HISTIDINE AMMONIA-LYASE 14 708 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cmu04g0945 708 Gene3D - 9 254 IPR024083 -
Cmu04g0945 708 SUPERFAMILY L-aspartase-like 17 708 IPR008948 GO:0003824(InterPro)
Cmu04g0945 708 FunFam Phenylalanine ammonia-lyase 8 254 - -
Cmu04g0945 708 NCBIfam phenylalanine ammonia-lyase 17 698 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cmu04g0945 708 Pfam Aromatic amino acid lyase 55 534 IPR001106 -
Cmu04g0945 708 Gene3D - 521 642 IPR023144 -
Cmu04g0945 708 FunFam Phenylalanine ammonia-lyase 255 560 - -
Cmu04g0945 708 Gene3D Fumarase/aspartase (Central domain) 255 703 - -
Cmu04g0945 708 FunFam Phenylalanine ammonia-lyase 521 642 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2120 Cmu-Chr2:34875763 Cmu04g0945 Cmu-Chr4:23925455 0.00E+00 dispersed
Cmu04g0943 Cmu-Chr4:23909135 Cmu04g0945 Cmu-Chr4:23925455 0.00E+00 dispersed
Cmu04g0945 Cmu-Chr4:23925455 Cmu04g0948 Cmu-Chr4:23939418 0.00E+00 dispersed
Cmu04g0944 Cmu-Chr4:23918451 Cmu04g0945 Cmu-Chr4:23925455 0.00E+00 tandem
Cmu04g0945 Cmu-Chr4:23925455 Cmu04g0946 Cmu-Chr4:23930214 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0945 K10775 - csv:101218382 1358.58