Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0946 ATGGCACCAACTCAATTCCAGCAACAGAATGGTTCAATGGAGTGCTTGTGCACTAGCCACAACGATCCACTCAACTGGGGTGTGGCCGCCGAGTCCCTCAAGGGAAGCCATCTCGATGAGGTGAAGCGCATGGTTGAGGAGTACCGGAGGCCCCTTGTCAAGCTTGGTGGTGAAACCCTCACTATTTCTCAAGTAGCTGCTATTGCTACTCGGGACTTTGATGTTACGGTTGAACTTTCTGAGTCTGCTAGAGCTGGTGTTAAAGCTAGTAGTGATTGGGTTATGGAGAGTATGAACAAAGGGACTGATAGTTATGGTGTTACTACTGGGTTTGGTGCTACGTCTCATAGAAGGACCAAACAAGGAGGTGCTCTTCAAAAGGAGTTGATTAGATTTTTGAACGCTGGGATTTTTGGAAATGGAGCTGAGTCTGATCATACTTTGCCCCACTCAGCGACAAGGGCGGCCATGTTGGTGAGAATCAATACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAAATTTTGGAAGCTATAACCAAACTTTTGAACCATAACATTACTCCATGCTTGCCTCTTCGTGGAACAATTACTGCTTCTGGAGATCTTGTTCCACTTTCTTATATTGCTGGATTGCTCACTGGACGACCTAACTCTAAGGCGATTGGACCCAACGGAGAACATATTGACGCCAAGGAGGCTTTCCAACAAGCTGGTATTCCTTCTGGGTTCTTCGAATTGCAACCTAAGGAAGGCCTTGCTCTTGTTAATGGTACTGCTGTCGGATCAGGATTGGCTTCTATTGTCCTCTTTGAGGCAAATATTTTGGCTGTTCTGGCAGAAATTCTTTCTGCTATTTTTGCTGAGGTCATGCAAGGAAAGCCTGAATTTACTGATCATTTGACTCATAAGTTGAAGCACCATCCTGGTCAAATTGAAGCAGCTGCAATTATGGAGCACATTTTGGATGGAAGCTCTTACATGAAAGCAGCCAAGAAATTGCATGAAATTGATCCCCTCCAAAAGCCTAAACAAGATCACTATGCTCTAAGAACTTCACCTCAATGGCTTGGTCCCTTGATTGAAGTGATTCGATTCTCTACAAAATCTATTGAGCGAGAGATTAACTCCGTCAATGACAACCCTTTGATTGACGTTTCAAGAAACAAAGCATTACATGGAGGCAACTTTCAAGGAACACCAATTGGAGTTTCCATGGACAACACTCGATTGGCCATTGCTTCTATTGGGAAGCTCATGTTTGCCCAATTCTCAGAACTTGTTAATGATTTCTACAACAACGGTTTGCCATCTAATCTTTCTGCAAGTAGAAATCCGAGTTTGGATTATGGGTTTAAAGGAGCTGAAATTGCCATGGCTTCATACTGCTCTGAGCTTCAATACCTTGCAAATCCAGTGACAAGCCATGTTCAAAGCGCCGAGCAACACAATCAAGATGTTAACTCTTTAGGTTTAATTTCTTCAAGGAAAACAGTTGAAGCCATTGATATTCTGAAACTCATGTCATCTACATTTTTGGTTGCTCTCTGCCAAGCAATTGACTTAAGGCATTTGGAGGAAAACTTGAAGAGCACTGTGAAAAGCACTGTTAGCCAAATAGCCAAGAAAGTATTAACCACATCCTCTAATGGCGCACTTCACCCCTCAAGATTTTGTGAGAAAGATCTACTCAAAGTCGTTGATAGAGAGTACACATTTGCTTATATCGACGATCCATGTAGTGCTACTTACCCATTAAGCCAAAAATTGAGGCAAGTTCTTGTTGAGCATGCACTTGCAAACGGTGATGATGAAAAGAACCCAAACACTTCAATCTTCCAAAAGATTGTTTCTTTCGAGGAGGAACTAAAGGCAATATTACCCAAGGAAGTTGAAAATGCAAGGTTGGCCTATGAGAGTGGAAATTCTAAAATTGAAAATCAAATCAAGAATTGTAGATCATATCCGTTGTATAGATTTGTAAGAGAAGAGTTGGAAACAAAAATGCTATCAGGAGAAAGAGTAATATCTCCAGGAGAAGAGTGTGAGAAAGTATTCACAGCTTTGTGTCAAGGCAAGATGATAGACTCGATCTTAGAGTGCTTGAAGGAGTGGAATGGTGCTCCAATTCCTATTTGCTAA 2142 42.02 MAPTQFQQQNGSMECLCTSHNDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDFDVTVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGEHIDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLAEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDHYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTVEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSTVSQIAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLSQKLRQVLVEHALANGDDEKNPNTSIFQKIVSFEEELKAILPKEVENARLAYESGNSKIENQIKNCRSYPLYRFVREELETKMLSGERVISPGEECEKVFTALCQGKMIDSILECLKEWNGAPIPIC 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23930214 23932355 - CmPI595203_04g009460.1 Cmu04g0946 414531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0946 713 CDD PAL-HAL 58 523 IPR001106 -
Cmu04g0946 713 Gene3D - 14 259 IPR024083 -
Cmu04g0946 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Cmu04g0946 713 FunFam Phenylalanine ammonia-lyase 526 647 - -
Cmu04g0946 713 NCBIfam phenylalanine ammonia-lyase 22 703 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cmu04g0946 713 FunFam Phenylalanine ammonia-lyase 13 259 - -
Cmu04g0946 713 Gene3D - 526 647 IPR023144 -
Cmu04g0946 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841(InterPro)
Cmu04g0946 713 Pfam Aromatic amino acid lyase 60 536 IPR001106 -
Cmu04g0946 713 SUPERFAMILY L-aspartase-like 22 713 IPR008948 GO:0003824(InterPro)
Cmu04g0946 713 PANTHER HISTIDINE AMMONIA-LYASE 19 713 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cmu04g0946 713 FunFam Phenylalanine ammonia-lyase 260 561 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0944 Cmu-Chr4:23918451 Cmu04g0946 Cmu-Chr4:23930214 0.00E+00 dispersed
Cmu04g0946 Cmu-Chr4:23930214 Cmu07g1165 Cmu-Chr7:26949215 0.00E+00 dispersed
Cmu04g0945 Cmu-Chr4:23925455 Cmu04g0946 Cmu-Chr4:23930214 0.00E+00 tandem
Cmu04g0946 Cmu-Chr4:23930214 Cmu04g0947 Cmu-Chr4:23935173 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0946 K10775 - csv:101218617 1338.94