Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0987 ATGGCCAAGCTATTATCATTGTCAACGCAAGGCCTATGGGCATCTCTGCTAATCGTGTTGTCGCATGTAATTTCTCATTCAAACGCAGCAGCCTCATTGAGACGTCTCCCGCCTTATGCAAAAGCGCGCAGGCAATTAGGAGGCGCGCAGTTTATTAAAAAGCATCACAGGCCGCCGTTTAAGCCCGGCCCTTGGAAGCAAGCCCACGCTACCTTCTATGAAGGTGGCTCCGGAACCTTCGGTGGTGCATGTGGGTACGACGACGTGGAAAAGGAAGGGTATGGAATGCAGACGGCGGCGCTTAGCATGGCGCTGTTCAACAACGGGCAGAGCTGCGGCGCTTGCTTTGAAATCAAATGCATTGACGATCCACAGCGGTGCAAGCCCGGGCAGCCGTCGCTCATGGTAACCGGCACCAACCACTGCCCGCCGAACTACAACCTTGCTAGTGACAATGGCGGATGGTGCAATCCCCCCCTCGAGCATTTCGATATAGCCAAGCCTGTTTTTCTCAACATTGCCGAGTTCAAGGCTGGCATTGTTCCTATCACTTACCGCAGGGTTCCATGCAAAAAGCAAGGAGGAATTCGATTCACAATAACTGGGAATCATTATTTCAACCAAGTGTTAGTGTGGAACGTAGGAGGAGCTGGAGATGTGAAAAGTGTCCAAGTGAAGGGTCACCGTAAGCTGAAATGGACAACCATGTCTCGATCGTGGGGTCAAAAATGGGTCACCAACGCCATGATGGTTGGCGAGTCTCTCACCTTCAGGGTTCGAACCAGTGATGGCAAATTCTCCACTTCATGGCACATTGCTCCCACCAATTGGCAGTTTGGTCAGACCTTCGAAGGCAAAAACTTCAAGTAG 870 51.61 MAKLLSLSTQGLWASLLIVLSHVISHSNAAASLRRLPPYAKARRQLGGAQFIKKHHRPPFKPGPWKQAHATFYEGGSGTFGGACGYDDVEKEGYGMQTAALSMALFNNGQSCGACFEIKCIDDPQRCKPGQPSLMVTGTNHCPPNYNLASDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPITYRRVPCKKQGGIRFTITGNHYFNQVLVWNVGGAGDVKSVQVKGHRKLKWTTMSRSWGQKWVTNAMMVGESLTFRVRTSDGKFSTSWHIAPTNWQFGQTFEGKNFK 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24399327 24402205 + CmPI595203_04g009870.1 Cmu04g0987 414572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0987 289 PANTHER EXPANSIN-A15 32 288 IPR002963 GO:0009664(InterPro)
Cmu04g0987 289 PRINTS Expansin signature 134 144 IPR002963 GO:0009664(InterPro)
Cmu04g0987 289 PRINTS Expansin signature 242 263 IPR002963 GO:0009664(InterPro)
Cmu04g0987 289 PRINTS Expansin signature 153 170 IPR002963 GO:0009664(InterPro)
Cmu04g0987 289 PRINTS Expansin signature 206 227 IPR002963 GO:0009664(InterPro)
Cmu04g0987 289 PRINTS Expansin signature 194 206 IPR002963 GO:0009664(InterPro)
Cmu04g0987 289 PRINTS Expansin signature 120 131 IPR002963 GO:0009664(InterPro)
Cmu04g0987 289 PRINTS Expansin signature 93 107 IPR002963 GO:0009664(InterPro)
Cmu04g0987 289 PRINTS Expansin signature 271 287 IPR002963 GO:0009664(InterPro)
Cmu04g0987 289 PRINTS Expansin signature 170 183 IPR002963 GO:0009664(InterPro)
Cmu04g0987 289 SMART dpbb_1 98 185 IPR007112 -
Cmu04g0987 289 Gene3D - 50 191 IPR036908 -
Cmu04g0987 289 Pfam Expansin C-terminal domain 196 274 IPR007117 -
Cmu04g0987 289 SUPERFAMILY PHL pollen allergen 192 285 IPR036749 -
Cmu04g0987 289 CDD DPBB_EXPA_N 64 190 - -
Cmu04g0987 289 SUPERFAMILY Barwin-like endoglucanases 64 213 IPR036908 -
Cmu04g0987 289 Gene3D - 194 288 IPR036749 -
Cmu04g0987 289 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 205 285 IPR007117 -
Cmu04g0987 289 Pfam Lytic transglycolase 98 185 IPR009009 -
Cmu04g0987 289 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 81 195 IPR007112 -
Cmu04g0987 289 PRINTS Expansin/Lol pI family signature 64 79 IPR007118 GO:0005576(InterPro)
Cmu04g0987 289 PRINTS Expansin/Lol pI family signature 102 120 IPR007118 GO:0005576(InterPro)
Cmu04g0987 289 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576(InterPro)
Cmu04g0987 289 PRINTS Expansin/Lol pI family signature 271 285 IPR007118 GO:0005576(InterPro)
Cmu04g0987 289 PRINTS Expansin/Lol pI family signature 178 194 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0987 Cmu-Chr4:24399327 Cmu07g0379 Cmu-Chr7:3820281 1.10E-91 dispersed
Cmu04g0987 Cmu-Chr4:24399327 Cmu04g0854 Cmu-Chr4:23047064 4.30E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0987 - - - 0.0