Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1001 ATGCAGCTTCCACTCAGTGGCTTCTTGCTCCCCTTCAGCCTCCTAGCTCTCATTTTTCCAGTGGCTACCGGTGATCCTCTTGTGCCTGCACTCTGCATCTTCGGGGACTCGGTCGTCGATGTCGGAAATAACAACAATCTTCTAACAGTTGTCAAGGCTAACTTTCCTCCTTATGGAAGAGACTTTGTTACTCATACACCAACAGGAAGGTTTTGCAATGGAAAGCTTGCCACTGATTTTACCGCTGAATTCCTTGGATTTTCTTCATATCCTCCTGCATATTTGAGCCAAGATGCCACTGGAAACAAGCTTTTAACAGGAGCCAACTTTGCTTCTGCTGCTTCTGGCTTTTATGATGGCACAGCTCAGCTCTATCATGCAGTTTCATTAACCCAGCAGTTGAATTATTACAAGGAATATCAAAGCAAAGTTGTGAACATGGTGGGAACAGAGAAAGCCAATGCCATATTCTCTGGTGCAATTCACCTTCTTAGTGCAGGCAGCAGTGATTTCATTCAGAATTACTATGTTAATCCTCTTCTTTACAGAACATACTCACCACAGCAATTCTCTGACATTCTCATTACATCTTTCTCCAACTTCATTCAGAACCTATATGGAATGGGAGCAAGGAGAATAGGGGTGACAGGGTTACCTCCATTGGGTTGCTTGCCAGCAGCTATCACCCTCTTTGGTTCTGGTAGCAACCAATGCATCCAAAGGTTAAATCAAGATGCCATTGCATTCAACACTAAGCTGCAAAGCACATCTCAGAGTTTGCAGAACAGATTCTCTGATCTCAAGCTTGTTGCCTTTGATATTTATCAACCTCTCTTGAATATGGTCTCGAAGCCTGCAGAAAATGGGTTTTTTGAGTCAAGAAGGGCTTGTTGTGGAACAGGAACAGTAGAGACTTCCTTCCTTTGCAACAGTAGATCAATTGGAACATGCTCAAATGCCACGGGCTATGTTTTCTGGGACGGTTTCCATCCAACCGAAGCCGCAAATCAAGTGTTGGCGGGGGATTTACTTACTCAGGGATTCAGCCTCATTTGA 1056 44.13 MQLPLSGFLLPFSLLALIFPVATGDPLVPALCIFGDSVVDVGNNNNLLTVVKANFPPYGRDFVTHTPTGRFCNGKLATDFTAEFLGFSSYPPAYLSQDATGNKLLTGANFASAASGFYDGTAQLYHAVSLTQQLNYYKEYQSKVVNMVGTEKANAIFSGAIHLLSAGSSDFIQNYYVNPLLYRTYSPQQFSDILITSFSNFIQNLYGMGARRIGVTGLPPLGCLPAAITLFGSGSNQCIQRLNQDAIAFNTKLQSTSQSLQNRFSDLKLVAFDIYQPLLNMVSKPAENGFFESRRACCGTGTVETSFLCNSRSIGTCSNATGYVFWDGFHPTEAANQVLAGDLLTQGFSLI 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24554085 24556209 + CmPI595203_04g010010.1 Cmu04g1001 414586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1001 351 Pfam GDSL-like Lipase/Acylhydrolase 33 340 IPR001087 GO:0016788(InterPro)
Cmu04g1001 351 FunFam GDSL esterase/lipase APG 21 347 - -
Cmu04g1001 351 CDD SGNH_plant_lipase_like 29 345 IPR035669 -
Cmu04g1001 351 Gene3D SGNH hydrolase 23 347 IPR036514 -
Cmu04g1001 351 PANTHER GDSL ESTERASE/LIPASE EXL3 21 341 IPR050592 -
Cmu04g1001 351 SUPERFAMILY SGNH hydrolase 154 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1001 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1001 Cmu-Chr4:24554085 Cmu07g1320 Cmu-Chr7:28515213 6.20E-118 dispersed
Cmu06g1667 Cmu-Chr6:27770933 Cmu04g1001 Cmu-Chr4:24554085 2.20E-44 transposed
Cmu02g2162 Cmu-Chr2:35240738 Cmu04g1001 Cmu-Chr4:24554085 3.80E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1077 Blo01g01217 . Bda01g00375 . . . . . . . . Cma07g00881 . Car07g00871 Sed10g1088 . . Bhi03g01495 Tan03g1149 Cmetu08g1342 . . . . Cla04g00946 Cam04g0986 Cec04g1111 Cco04g1168 Clacu04g1014 Cmu04g1001 Cre04g1056 Cone3ag0216 Cone10ag0196 . . . Csa06g02639 Chy08g00897 . . . . . . Bpe02g00740 Bma01g01972 . . . Cmo07g00914 . . . . . Cpe19g00443 . . . . . . . . . . . . . . . . . Cme08g01245
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002890 1 2 1 2 1 2 2 2 2 2 1 2 2 2 2 2 2 3 2 2 2 2 1 2 2 2 2 2 2 1 55