Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu04g1009 | ATGGCGGTAACGAAGGGGAAGCTACTTTACAAAGTATACAGAGCGCTGAGCTACGGCCTCTCGCCATTGCTCTACCTTCACCTCCGATGGCGGGTGCTTTGTGGCCTCGAGCACCCTTTCCGATGGCCGGAGCGTCTTGGTCGCCCTTCCCATGCTCGTCCTCCCGGATCACTCCTCTGGTTTCATGCCGTCTCTTTAGGAGAAGGTTTGGCTACCATTCCTATAATCAAACAATGTATTCAGAGGAGGCCTGATTTGACAATTTTGATGACAACAACTACTTATTCTGCCTTTCAGGTAGTGAAGAATTGTCTTCCTACCGGTGTCATATATCAGTTTGCCCCACTTGATACAGCTGCTGCCATAGACACTTTCATTGAACATTGGAAGCCTAAAGTTATTATTTTAATGGAGAGTGAACTTTGGCCTAATCTTATCTTGGGTGCTTCACAGCGTGGTATTTCAATGGCATTGTTAAATGCTCGGATGTCAGCTATGTCTTTTAAGCGTTGGTCAATTCCAGTGGTTCTTCCCTTGATTTCACTTATGCTATCAAAGTTCTCATTGATTCTCCCCTTGAGCAACCTACAGGCCATCCGGTTCCAGCTACTGCAGGCTTCGCCACCGATCATCAGTTTTGCTGGTGATCTGAAATTTGCCGTTGAAGATGTTGGTATGTCAGAGGAAGAGATCAAAAAGGTTGAAGATCTAAGAGCACAATTGGCCCAAAGACAAGTTTGGATGGCTTCGTCCATACATAAAGGCGAAGAAGAAGTTATACTTGAAGTTCACAAAATGCTCTTAGAAGCACACCCAAATCTAGTCACTGTTATTGTACCTCGACATCCACAGCATGGAAAAGAGATCGCTTTAGAAATGCAGAAAGAAGGGCAGAATGTAGCTTTGAGATCTCAAGGTGAAAAGATTACATCAGCAACGAATGTATACGTTATAGACACATTAGGTGAATTAAGATATTTGTATGGGATAACCTCCATTGCTGTGGTTGGAGGATCCTTCTTGCCTGGTCTTGCTGGTCACAACATATCAGAAGCTGCTGCAGCTGGTTGTGCTGTTTTGACTGGTCCATATATTGGCCATTTCTCAAGCATGGTGGTTAAAATGCAGCAGTTTAATCCAATGTCAGTTTTGCAGGTTCATGGAAAATTTGACCTTGAAGAGGCTCTCAGAAATCTCCTTAAAGATGACAAAGTTTTGGAAGCGCACCGAATGGCCGCAAAACATGCGCAGCAAACTTTGGCGAGTGGCATTATTGTGGCGCAGGGCAGAACCAGAACCAGAACCAGAACCAGAACCAGAACCAGAACCAGGTTTTCTCTTATTCCGCTCTCGGAGTCAGAGATAGAAAGGCATATTCCACGATTCCCCACTCCCCGATTTTCCATTCATTCCTTCCTCTTCCTATTCCTCCGATTTCAATTCCCTCTTCCCTTTCAATTTCTTCTCTCAATCACCGCCGATTACCCATCCATCAACGCAAACATGCATTCTAATCACTTGCTTCTCGAGGAGCCCATTCGCATGGCCTCCATCCTCGAGCCATCCAAGTCTAGTTTCTTTCCTGCTATGACTAAGATCGTTGGGACTCTTGGTCCAAGGTCTCGATCTGTTGACATAATCTCTGGCTGTCTCAAGGCTGGAATGTCGGTTGCTCGTTTCGACTTTTCATGGGGTAACCCTGAATATCATCAGGAGACTTTGGAGAATTTGAAGGCGGCCGTGAAGAGTACCAAGAAGCTTTGCGCTGTTATGCTTGACACTGTGGGCCCTGAGTTGCAAGTAATAAACAAAACTGAGAAATCCATTTCACTTCAAGAAGATGCAATAGTTGTCCTTACACCCAATCAAGATCTTGAGGCGACTTCAGAGCTCTTGCCTATTAACTTTACAGGACTTTCAAAGGCTGTGAAGAAAGGAGACACCATTTTCGTGGGTCAATACCTTTTCACCGGAAGTGAATCAACCTCTGCATGGCTGGAGGTTTCTGAAGTCAAAGGTGATGATGTTGTTTGTGTAATTAAAAACTCTGCCACATTGGCTGGATCACTGTTCACTTTGCATGGCTCTCAAATTCATATTAACCTTCCTACACTTTCTGATGAGGATAAGGAGGTTATATCGAGTTGGGGAGTGCAAAACAAAATTGATTTCCTTTCACTATCATATACTAGACATGCCGAAGATGTTCGACAAGCTCGTGAATTCCTTTCTAAGTTAGGCGACCTTAGCCAAACCCAAATCTTTGCCAAGATCGAGACTGTTGAGGGATTAACCCATTTTGATGAGATTCTACAAGAAGCAGACGGTATTATCCTATCCCGTGGAAATTTGGGTATAGATCTCCCACCCGAGAAGGTGTTTTTATTTCAGAAAGCTGCCCTTTACAAGTGTAACATGGCTGGAAAGCCTGCCGTGGTTACTCGTGTTGTGGACAGTATGACCAACAATTTAAGGCCTACTCGTGCAGAAGCTACTGATGTTGCAAATGCGGTCCTTGATGGGAGTGATGCTATTCTTCTGGGGGCTGAGACTTTGCGTGGACTGTATCCAGTTGAGACTATTTCTACTGTTGGTAGGATTTGTGCCGAGTCTGAGAAGGTGTTCAATCAAGATTTATATTTCAAGAAGACTGTCAAATTTGTTGGGGAACCTATGACGCACTTGGAATCCATTGCTTCCTCAGCGGTTAGGGCTGCCATTAAGGTGAAGGCTTCGGTTATTATTTGCTTCACTTCATCTGGAAGAGCTGCAAGATTAATTGCTAAATATAGGCCCACAATGCCAGTTATATCCGTTGTCATTCCTAGGCTGAAGACAAATCAGTTAAGGTGGAGCTTTACTGGGGCATTTGAGGCTAGGCAGTCATTGATAGTAAGAGGCCTCTTCCCTATGCTTGCTGATCCACGACATCCTGCGGAATCTACTAGTGCAACAAATGAGTCGGTTCTAAAGGTTGCTCTGGACCATGGCAAAGCATCTGGAGTAATTAAGTCACATGACCGAGTTGTTGTTTGTCAGAAGGTTGGGGATGCATCTGTGGTCAAGATTATCGAGCTTGAAGATTGA | 3087 | 44.54 | MAVTKGKLLYKVYRALSYGLSPLLYLHLRWRVLCGLEHPFRWPERLGRPSHARPPGSLLWFHAVSLGEGLATIPIIKQCIQRRPDLTILMTTTTYSAFQVVKNCLPTGVIYQFAPLDTAAAIDTFIEHWKPKVIILMESELWPNLILGASQRGISMALLNARMSAMSFKRWSIPVVLPLISLMLSKFSLILPLSNLQAIRFQLLQASPPIISFAGDLKFAVEDVGMSEEEIKKVEDLRAQLAQRQVWMASSIHKGEEEVILEVHKMLLEAHPNLVTVIVPRHPQHGKEIALEMQKEGQNVALRSQGEKITSATNVYVIDTLGELRYLYGITSIAVVGGSFLPGLAGHNISEAAAAGCAVLTGPYIGHFSSMVVKMQQFNPMSVLQVHGKFDLEEALRNLLKDDKVLEAHRMAAKHAQQTLASGIIVAQGRTRTRTRTRTRTRTRFSLIPLSESEIERHIPRFPTPRFSIHSFLFLFLRFQFPLPFQFLLSITADYPSINANMHSNHLLLEEPIRMASILEPSKSSFFPAMTKIVGTLGPRSRSVDIISGCLKAGMSVARFDFSWGNPEYHQETLENLKAAVKSTKKLCAVMLDTVGPELQVINKTEKSISLQEDAIVVLTPNQDLEATSELLPINFTGLSKAVKKGDTIFVGQYLFTGSESTSAWLEVSEVKGDDVVCVIKNSATLAGSLFTLHGSQIHINLPTLSDEDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREFLSKLGDLSQTQIFAKIETVEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTNNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISTVGRICAESEKVFNQDLYFKKTVKFVGEPMTHLESIASSAVRAAIKVKASVIICFTSSGRAARLIAKYRPTMPVISVVIPRLKTNQLRWSFTGAFEARQSLIVRGLFPMLADPRHPAESTSATNESVLKVALDHGKASGVIKSHDRVVVCQKVGDASVVKIIELED | 1028 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 24638926 | 24657275 | - | CmPI595203_04g010090.1 | Cmu04g1009 | 414594 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu04g1009 | 1028 | Gene3D | - | 864 | 1026 | IPR036918 | - | |
| Cmu04g1009 | 1028 | FunFam | Pyruvate kinase | 597 | 703 | - | - | |
| Cmu04g1009 | 1028 | Gene3D | Glycogen Phosphorylase B; | 229 | 419 | - | - | |
| Cmu04g1009 | 1028 | FunFam | 3-deoxy-D-manno-octulosonic acid transferase | 41 | 219 | - | - | |
| Cmu04g1009 | 1028 | Pfam | Pyruvate kinase, barrel domain | 531 | 861 | IPR015793 | GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro) | |
| Cmu04g1009 | 1028 | Gene3D | - | 40 | 219 | IPR038107 | - | |
| Cmu04g1009 | 1028 | Gene3D | - | 531 | 863 | IPR040442 | - | |
| Cmu04g1009 | 1028 | FunFam | Pyruvate kinase | 872 | 1014 | - | - | |
| Cmu04g1009 | 1028 | PANTHER | 3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE | 5 | 425 | IPR039901 | GO:0005886(PANTHER)|GO:0009245(PANTHER)|GO:0016740(InterPro)|GO:0016740(PANTHER) | |
| Cmu04g1009 | 1028 | Pfam | 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) | 41 | 220 | IPR007507 | - | |
| Cmu04g1009 | 1028 | Pfam | Pyruvate kinase, alpha/beta domain | 896 | 1016 | IPR015795 | - | |
| Cmu04g1009 | 1028 | NCBIfam | pyruvate kinase | 531 | 1017 | IPR001697 | GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro) | |
| Cmu04g1009 | 1028 | SUPERFAMILY | Phosphoenolpyruvate/pyruvate domain | 507 | 876 | IPR015813 | GO:0003824(InterPro) | |
| Cmu04g1009 | 1028 | SUPERFAMILY | PK beta-barrel domain-like | 597 | 687 | IPR011037 | - | |
| Cmu04g1009 | 1028 | FunFam | 3-deoxy-D-manno-octulosonic acid transferase | 230 | 418 | - | - | |
| Cmu04g1009 | 1028 | PRINTS | Pyruvate kinase family signature | 849 | 865 | IPR001697 | GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro) | |
| Cmu04g1009 | 1028 | PRINTS | Pyruvate kinase family signature | 754 | 780 | IPR001697 | GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro) | |
| Cmu04g1009 | 1028 | PRINTS | Pyruvate kinase family signature | 722 | 736 | IPR001697 | GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro) | |
| Cmu04g1009 | 1028 | PRINTS | Pyruvate kinase family signature | 586 | 602 | IPR001697 | GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro) | |
| Cmu04g1009 | 1028 | PRINTS | Pyruvate kinase family signature | 781 | 805 | IPR001697 | GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro) | |
| Cmu04g1009 | 1028 | PRINTS | Pyruvate kinase family signature | 830 | 848 | IPR001697 | GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro) | |
| Cmu04g1009 | 1028 | Coils | Coil | 224 | 244 | - | - | |
| Cmu04g1009 | 1028 | Gene3D | - | 598 | 702 | IPR015806 | GO:0004743(InterPro)|GO:0006096(InterPro) | |
| Cmu04g1009 | 1028 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 72 | 427 | - | - | |
| Cmu04g1009 | 1028 | SUPERFAMILY | PK C-terminal domain-like | 859 | 1020 | IPR036918 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu04g1009 | Cmu-Chr4:24638926 | Cmu11g1294 | Cmu-Chr11:25150730 | 1.80E-104 | dispersed | |
| Cmu04g1008 | Cmu-Chr4:24617048 | Cmu04g1009 | Cmu-Chr4:24638926 | 2.70E-249 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu04g1009 | K00873 | - | csv:101207102 | 1012.29 |