Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1019 ATGTTTTTCTCCAAAACCAAATCTCTTAATTCTACACCAAACCCTCCTCGTTACCGAGGTGTCCGCCGTCGGAGCTCCGGCAAGTGGGTTTCAGAGATTCGGGAGCCCAGGAAGCCTAATAGGATTTGGTTGGGAACTTTCCCTACCCCGGAAATGGCTGCCATCGCTTATGACGTGGCAGCCCTGGCTGTCAAGGGCCCCAACGCTGACCTCAACTTTCCTAATTTGGCATCTTCCTTACCAGTGCCGGCCTCCACCGCCGCACGTGATATTCAGGCTGCAGCCACGTCTGCTGCAACAGCTATAGGAGCAGCTGCAGCTACAATAGGGTTAGATGGTAATCCTGCGAATGGGAGTACTAGAGAAAAAGAAGATGAGGAAGGAGATGAAGGAGAGGAATTAGTAGAGGGGGGATTTGTAGATGAAGATATGATATTTGATATGCCAAATATTCTTATGAATATGGCTGAAGGAATGCTTCTCACTCCTCCATCCTTCAACTTCAACATCAATGCTCCAAATGATTATGAATATCCTCCAACCTATACTCAAGATAACCTTTGGGAATTCCCTTAA 576 47.4 MFFSKTKSLNSTPNPPRYRGVRRRSSGKWVSEIREPRKPNRIWLGTFPTPEMAAIAYDVAALAVKGPNADLNFPNLASSLPVPASTAARDIQAAATSAATAIGAAAATIGLDGNPANGSTREKEDEEGDEGEELVEGGFVDEDMIFDMPNILMNMAEGMLLTPPSFNFNINAPNDYEYPPTYTQDNLWEFP 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24779613 24780188 - CmPI595203_04g010190.1 Cmu04g1019 414604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1019 191 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu04g1019 191 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu04g1019 191 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu04g1019 191 MobiDBLite consensus disorder prediction 1 15 - -
Cmu04g1019 191 MobiDBLite consensus disorder prediction 1 31 - -
Cmu04g1019 191 FunFam Ethylene-responsive transcription factor 2 17 75 - -
Cmu04g1019 191 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu04g1019 191 SMART rav1_2 17 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu04g1019 191 MobiDBLite consensus disorder prediction 111 135 - -
Cmu04g1019 191 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677(InterPro)
Cmu04g1019 191 Pfam AP2 domain 16 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu04g1019 191 CDD AP2 16 76 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu04g1019 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 153 IPR051032 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1019 Cmu-Chr4:24779613 Cmu10g2651 Cmu-Chr10:33322369 2.70E-43 dispersed
Cmu10g2650 Cmu-Chr10:33313386 Cmu04g1019 Cmu-Chr4:24779613 6.50E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6022 PF00847 AP2 1.40E-12 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1019 - - - 0.0