Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1037 ATGGCGGAAGAGCACAGATGCCAAGCACCTGAAGGCCATCGTCTCTGCGCTAATAATTGCGGCTTCTTCGGTAGCCCAGCTACCATGGATCTCTGCTCCAAATGTTACAGAGACTTCCGTCTTAAAGAACAAGAACAAGCCTCCACCAAATCCACCATCGAAGCCGCTCTCTCGGCCTCATCATCTCCTTCTCCTTCCTCTTCCCCAGTCGATCCTCCCCCCGTTCCCCCTGTTGTCGAATTGTCCCTGCCGGACTCCACCACAGATCTGACCATCCCTCCCCTCGCGGCCGTCGGATCTGAAGCCGCAAACCAACCGAATCCTACTCCGAACCCGAACCCCAACCCAAACCGTTGTTCGTCGTGCCGTAAGAAGGTGGGTTTGACCGGGTTCAAATGCAGATGCGGAACCACGTTCTGTGGGGCTCATAGGTACCCGGAGAAACACGGCTGCACCTTCGACTTCAAGTCAATCGGAAGAGAGGAGATCGCTCGAGCGAACCCCGTCGTCAAAGCCGATAAACTGGAAAGGATTTGA 537 55.31 MAEEHRCQAPEGHRLCANNCGFFGSPATMDLCSKCYRDFRLKEQEQASTKSTIEAALSASSSPSPSSSPVDPPPVPPVVELSLPDSTTDLTIPPLAAVGSEAANQPNPTPNPNPNPNRCSSCRKKVGLTGFKCRCGTTFCGAHRYPEKHGCTFDFKSIGREEIARANPVVKADKLERI 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24937955 24938491 + CmPI595203_04g010370.1 Cmu04g1037 414622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1037 178 MobiDBLite consensus disorder prediction 46 118 - -
Cmu04g1037 178 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cmu04g1037 178 Gene3D - 96 174 IPR035896 -
Cmu04g1037 178 SUPERFAMILY AN1-like Zinc finger 102 173 IPR035896 -
Cmu04g1037 178 MobiDBLite consensus disorder prediction 48 65 - -
Cmu04g1037 178 Gene3D - 1 69 - -
Cmu04g1037 178 MobiDBLite consensus disorder prediction 66 80 - -
Cmu04g1037 178 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 58 - -
Cmu04g1037 178 SMART A20_3 13 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cmu04g1037 178 PANTHER AN1-TYPE ZINC FINGER PROTEIN 11 178 IPR050652 -
Cmu04g1037 178 ProSiteProfiles Zinc finger AN1-type profile. 113 159 IPR000058 GO:0008270(InterPro)
Cmu04g1037 178 FunFam Zinc finger AN1-type containing 6 96 174 - -
Cmu04g1037 178 SMART AN1_Zf_4 119 156 IPR000058 GO:0008270(InterPro)
Cmu04g1037 178 Pfam AN1-like Zinc finger 119 155 IPR000058 GO:0008270(InterPro)
Cmu04g1037 178 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2203 Cmu-Chr2:35663318 Cmu04g1037 Cmu-Chr4:24937955 1.20E-39 dispersed
Cmu04g1037 Cmu-Chr4:24937955 Cmu09g0411 Cmu-Chr9:3914437 4.40E-27 dispersed
Cmu04g1037 Cmu-Chr4:24937955 Cmu01g0334 Cmu-Chr1:3467574 6.50E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1037 - - - 0.0