Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1074 ATGCGTGGCGCCTCTCGAGCTCCGAACCGGTCGGAGCCACTGCCTCAGTCCCAAACTGCCCAGATCCTGCCGCCTCTCAAGCGCCACCTTGCTTTTGACTCCGCTAAGCCGCCCTTCGCTCCTCCGGGTCATTATTACCACTTCGGCGGCGGTTCCTCCAATGCTATTGATCAACAACCTGATTCCATCGTTGTTAAACCTCTTAAACCAAAGCAGAAGGGTGTCATGTATAACAATGTGGTTGAATCGAACGATTACAGTCATGATCAGGGATCTTCTCTTAGTTCTGTGCAGACACCTGTGTCTGGAAAAGGAGGAAGGGTGTACAATAAGTCGAAGACTTCAAGGAAAACTACATCTGGGCCTCAAACACCTATCTCAGACACTAGCACTTATTCTCCCCTTACTCCAGCTGGAAACTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATCTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATACTGGAAAGGTTTCAATCAACAAATTCCAGGAAATGTGGATAGCGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGTAATGCAGGAAAGACTGAGGAATCTGAGTGAAGACGAAAATATCCAAAAGTGGCTCTTTGTGACAGAAGAAGACATTAAAAACTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACCTTGGAAGTTCCTGATCCTGATGAAGCTGTAGATTATCCACAGAGAAGATACCGGATAGTTCTTAGGAGTACAATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGATGAATGTGGTTCCGCCACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTAGCAACAGAAGCAATCATCGGGGAGAGTAGTAGAAACGAAATTGAACCTCAAGCTCATCTGTCCCAACACAGCAGCAGCTGTGATGTGAATGGTTCCAATGAGTTTCCTGTTGGAATGATGAAGATTATTCCTTCAGATGTCGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACCGATTCAGATATTGCATGGGATCAATCAGATATGGTTCCTCATGACTTTTTAATATCTGATGTCAGTGCTCAAAGGCCAAGACCAGGAAGCCCACATTCAGAGACAGCCGAAGCACCATCTGATGTTAACTTAAGACAGAGATGA 1410 42.98 MRGASRAPNRSEPLPQSQTAQILPPLKRHLAFDSAKPPFAPPGHYYHFGGGSSNAIDQQPDSIVVKPLKPKQKGVMYNNVVESNDYSHDQGSSLSSVQTPVSGKGGRVYNKSKTSRKTTSGPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNQQIPGNVDSDTSMLQVDVENLSFEERRLDDKIRVMQERLRNLSEDENIQKWLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVPPPSSFLHASSSGSNEHLATEAIIGESSRNEIEPQAHLSQHSSSCDVNGSNEFPVGMMKIIPSDVDNDADYWLLSDAEVSITDMWRTDSDIAWDQSDMVPHDFLISDVSAQRPRPGSPHSETAEAPSDVNLRQR 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25297633 25304265 - CmPI595203_04g010740.1 Cmu04g1074 414659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1074 469 Gene3D - 136 210 IPR036388 -
Cmu04g1074 469 MobiDBLite consensus disorder prediction 1 38 - -
Cmu04g1074 469 FunFam E2F transcription factor 1 136 209 - -
Cmu04g1074 469 Coils Coil 234 254 - -
Cmu04g1074 469 MobiDBLite consensus disorder prediction 83 137 - -
Cmu04g1074 469 Gene3D - 214 324 - -
Cmu04g1074 469 PANTHER TRANSCRIPTION FACTOR E2F 59 422 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cmu04g1074 469 MobiDBLite consensus disorder prediction 443 469 - -
Cmu04g1074 469 SMART E2F_TDP_2 142 207 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cmu04g1074 469 Pfam E2F transcription factor CC-MB domain 223 323 IPR032198 GO:0046983(InterPro)
Cmu04g1074 469 Pfam E2F/DP family winged-helix DNA-binding domain 144 207 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cmu04g1074 469 SUPERFAMILY E2F-DP heterodimerization region 221 324 IPR037241 -
Cmu04g1074 469 CDD E2F_DD 223 324 IPR032198 GO:0046983(InterPro)
Cmu04g1074 469 SUPERFAMILY Winged helix DNA-binding domain 142 205 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1074 Cmu-Chr4:25297633 Cmu06g1715 Cmu-Chr6:28178885 9.80E-10 dispersed
Cmu08g1381 Cmu-Chr8:25964876 Cmu04g1074 Cmu-Chr4:25297633 6.40E-58 transposed
Cmu02g2221 Cmu-Chr2:35789473 Cmu04g1074 Cmu-Chr4:25297633 7.80E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6027 PF16421 E2F_CC-MB 4.70E-33 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1074 K06620 - csv:101212480 760.755