Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1077 ATGCTGGCTGATCTCTCTTCTCCTTCACTTCCTTGTTTTGAGCCTTTGTCTAATTGCTTTGAAAACAATGGAACCAATAACAAAAGAAAAAGAAGACCTGCTGGAACTCCAGACCCCGATGCAGAGGTCGTTTCTCTCTCTCCAAAAACTCTATTGGAATCAGATCGTTACGTATGTGAGATCTGCAATCAAGGGTTTCAAAGAGATCAGAATCTACAGATGCATCGACGTCGACACAAGGTGCCATGGAAGTTATTGAAAAGAACGGAGGCGACGGCCGTAGTGAGAAAACGGGTGTTCGTTTGCCCGGAACCGAGCTGCTTACACCATAACCCTACTCATGCTTTGGGGGATTTGGTAGGGATAAAGAAGCACTTTAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAAAAATGCTCTAAAGGATATGCTGTTCAATCTGATTACAAGGCTCATCTCAAAACTTGTGGAACTAGAGGCCACTCTTGTGACTGTGGTCGAGTTTTCTCCAGGGTTGAGAGTTTCATAGAACATCAAGATAGTTGCAAATTGGGACATCATCAACAACAATCAGAACAAAAAATTCCATGTTTATCTAGAACAGCTTCAAGTCCAACTCCAAGCCCTTCTTCAGATACAAATTTCAGCTTCTTAAAACAAAACCAAACATTTAGTACTACAATTGATCATCATCATCATGATGGAGCTGACAAATATTCAACAAAAACAACAATAATTCCCCAGAGAATTATTAGCCATAATCATCATCAAAATTTGGACCTTCAACTTTCCACAAATTCAACTTCCATTCATGTTTCAGTTTCTCCAAAAAGACACGAAAATTACTCAACCCATTTGCAACTTTCGATTGGTTCTTGCAATTATGGTGAGAAAAATGATCATGATAGTAATAGCAACAATCATGATGATGACGAGAAATTGGGTTTTTTGAGGCTGAAAGAGGAAGCTAAAGAACAAATGAGAGTGGCAATGGAGGAGAAAGCTGTGGCTGAAGAAGCAAGAAATGAAGCTAAGAAGCAAATTGAAATGGCTGAAAAGGAATTGGTAAATGCCAAGAGAATGAGACAACAAGCACAAGCTGAGTTACAAAGAGCCCTTGCTTTGAAAGAACATGCCATCAAGAAAATCAACTCCACCATCCTCCAAATCACTTGCCAAGCAATAGAAGGAGTTAACTCTATTTTTCTAATATGGAATCTTCAACACCTAGAACCAGGGTTTCTTGAATCTCCCGCACCTACCTGTGGTTCAATCATGAGTTGTGGTTGTGCAAATTGCACACCCTTGGCTCAAAAGGCCCTCTTCGACTACAGCATGGTCGGTCTTGGCCAAGGTGGGCCTGTCGAGTCATCAACATTTTTGGGGCTTGAGCTTGATTTTTGTGGTTTTGAATCTCGGTTTTTCCAATTAGTGTTCAAGTGGTATTAG 1455 40.41 MLADLSSPSLPCFEPLSNCFENNGTNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRTEATAVVRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDSCKLGHHQQQSEQKIPCLSRTASSPTPSPSSDTNFSFLKQNQTFSTTIDHHHHDGADKYSTKTTIIPQRIISHNHHQNLDLQLSTNSTSIHVSVSPKRHENYSTHLQLSIGSCNYGEKNDHDSNSNNHDDDEKLGFLRLKEEAKEQMRVAMEEKAVAEEARNEAKKQIEMAEKELVNAKRMRQQAQAELQRALALKEHAIKKINSTILQITCQAIEGVNSIFLIWNLQHLEPGFLESPAPTCGSIMSCGCANCTPLAQKALFDYSMVGLGQGGPVESSTFLGLELDFCGFESRFFQLVFKWY 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25352290 25356103 + CmPI595203_04g010770.1 Cmu04g1077 414662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1077 484 MobiDBLite consensus disorder prediction 195 218 - -
Cmu04g1077 484 FunFam protein indeterminate-domain 12-like 36 106 - -
Cmu04g1077 484 SMART c2h2final6 100 130 IPR013087 -
Cmu04g1077 484 SMART c2h2final6 136 163 IPR013087 -
Cmu04g1077 484 SMART c2h2final6 57 79 IPR013087 -
Cmu04g1077 484 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 135 159 - -
Cmu04g1077 484 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Cmu04g1077 484 Gene3D Classic Zinc Finger 35 100 - -
Cmu04g1077 484 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 96 130 - -
Cmu04g1077 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cmu04g1077 484 Coils Coil 322 384 - -
Cmu04g1077 484 SUPERFAMILY beta-beta-alpha zinc fingers 56 156 IPR036236 -
Cmu04g1077 484 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cmu04g1077 484 MobiDBLite consensus disorder prediction 23 43 - -
Cmu04g1077 484 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 370 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1077 Cmu-Chr4:25352290 Cmu04g1315 Cmu-Chr4:27452547 1.00E-110 dispersed
Cmu04g1077 Cmu-Chr4:25352290 Cmu08g1461 Cmu-Chr8:26654586 2.80E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6029 None None None None Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1077 K25871 - csv:101210748 712.22