Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1081 ATGGCTCTCGTCCGCGATCGCCGCCACTTAAACCTCCGCCTCCCCGACCTCTCCGACTGCCGTCCCCGCTTCCCTCTCCCCCTCCCTCCCTCCTCCGCCCCCGCCCCTCCCGCCGCCCCCTCCGCCATCTCCTCCTCCGACCTCGACAAGCTCCAAGTCCTCGGCCACGGCAACGGTGGCACCGTCTACAAAGTCCGCCACAAACGCACCTCCACTACTTACGCTCTCAAAGTCGTCCATGGAGACTGCGATCCCACCGTCCGTCGCCAAGTTTTCAGAGAGATGGAGATTCTGCGCCGTACTGATTCTCCCTATGTCGTTCAGTGCCATGGAATCTTCGAGAAGCCTTCTGGAGATGTAACGATTTTGATGGAGTATATGGATCTAGGATCGCTTGATTCACTTTTGAAAAAGAATTCGACGTTGTCGGAATCGACGCTTGCTCACGTATCGCGTCAAGTTCTTAACGGACTTCATTATCTTCATTCTCACAAAATCATTCATCGCGATATTAAACCGTCGAACCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCTGATTTTGGAGTTAGTAAAATTATGTGCAGGACTTTGGATGCTTGTAATTCCTACGTCGGAACTTGCGCTTATATGAGTCCAGAGCGGTTCGATCCAGAGACTTACGGCGGAAATTACAACGGTTACGCCGGTGATATTTGGAGTTTGGGGCTTACTCTTCTGGAACTTTATTTAGGTCATTTTCCTTTTCTTCCGCCTGGACAGAGACCGGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGTGAACCACCTACACTGCCGGAGAATGCGTCGGAGGAGTTTCGAAGCTTTGTTGAGTGTTGCTTGCAGAAGGAATCTAGCAAGAGGTGGACGGCGGCGCAATTGTTGACGCATCCGTTTGTATGCAGGGAATCATCGAGATCCGATCGATTAATCGGCGGTGGATTGAAGGATTCCGAATCACTGGCAGTTTAA 999 51.35 MALVRDRRHLNLRLPDLSDCRPRFPLPLPPSSAPAPPAAPSAISSSDLDKLQVLGHGNGGTVYKVRHKRTSTTYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSESTLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPTLPENASEEFRSFVECCLQKESSKRWTAAQLLTHPFVCRESSRSDRLIGGGLKDSESLAV 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25408940 25409938 + CmPI595203_04g010810.1 Cmu04g1081 414666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1081 332 MobiDBLite consensus disorder prediction 23 44 - -
Cmu04g1081 332 Gene3D Transferase(Phosphotransferase) domain 1 130 320 - -
Cmu04g1081 332 Gene3D Phosphorylase Kinase; domain 1 37 128 - -
Cmu04g1081 332 CDD PKc_MAPKK_plant_like 47 309 - -
Cmu04g1081 332 Pfam Protein kinase domain 50 309 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g1081 332 ProSiteProfiles Protein kinase domain profile. 48 309 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g1081 332 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524(InterPro)
Cmu04g1081 332 MobiDBLite consensus disorder prediction 23 37 - -
Cmu04g1081 332 SUPERFAMILY Protein kinase-like (PK-like) 47 311 IPR011009 -
Cmu04g1081 332 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu04g1081 332 FunFam Mitogen-activated protein kinase kinase 30 124 - -
Cmu04g1081 332 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 42 313 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cmu04g1081 332 FunFam Mitogen-activated protein kinase 2 129 320 - -
Cmu04g1081 332 SMART serkin_6 48 309 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1081 Cmu-Chr4:25408940 Cmu07g1398 Cmu-Chr7:29247554 2.70E-86 dispersed
Cmu04g1081 Cmu-Chr4:25408940 Cmu11g0162 Cmu-Chr11:2094949 7.50E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75475 PF00069 Pkinase 1.40E-65 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1081 K20604 - csv:101203133 601.282