Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1103 ATGTGGATGATGGGTTACAATGACGCTACAGATTTGAACTTCCCTTCCGATAACTCTTTCAATTCTCGCAAACTTAGACCTCTAATTCCTCGCCCTCTCTCTTCTTCTTCCTCTTCCTCCATTAACAATCTCATCCCCACCAACGATTTCTTCTCCCAATTTCATCACATGGCGACGGTGACGGATCAAAGTAAGAGAGAGTTGAACAATGTGTCGTCGTTGTCACCGCCTGTGGTGGTGAGCTCGCGGTGGAATCCGACGCCTGAGCAGTTGAGAGTGTTGGAGGAATTGTATCGGCGGGGGACTCGAACCCCCTCTGCCGATCAAATTCAACATATCACTGCTCAGCTTCGTCGTTACGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAAAATCATAAAGCTAGAGAACGGCAGAAACGTCGTCGTCAGATGGAATCCGCCATCACTGCCGCCGACCTCTCTACTCGCGACGCCGAAATCCTAGAAAGGAAAGATTCAGGGTCGGGCAGAACAGTGTATGAAGAACAGACCAAAAACTGGGTGCCCTCTACAAACTGCAGTACACTTCCGGAGGAATCTGTTCCAATTCAAAGGGCGGCAAAAGGTAGTGTAATTGGAGGAGCAGATTGCAGAACAGAAAATGGATGGATTCAATTCGAGGAATTGCGCCAAATAAGGAATAACAACACCAACAACTTTGCTGAAAAAAATACCAATAACATCAACAATATTAACAATTCAGCCTCCTTACAATTGATGCATTGTCCGGCAGCCGCTCTACGTGGTGGCGGTGGCGGCGGCGGCGGCGGCAGCCAACTAATGATGAACATTGCCCCCATCACTACCACAGCCACAGTGACAACAATAATGCACCCAAAATCTCATAGAAGAAGTAATATTTCAGGTAATTTTAATATAATTGGAGCCTACACTCAAAATGGGGTTGAAGAATTGGAAGAAATAGAAGAAGAATTAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGGTGTGGGGAATCTGAAACCCTACAACTTTTTCCATTGTGCAGTGACACAAGAAATGGTGAGACTATTGGTGGCCAAAATGGGTGTGAAACAGTGGAAAATTCAGCCATGAATAGTACTAATCTGACTCCACTTCAGTTCTTTGAATTCCTTCCATTGAAGAATTGA 1197 45.28 MWMMGYNDATDLNFPSDNSFNSRKLRPLIPRPLSSSSSSSINNLIPTNDFFSQFHHMATVTDQSKRELNNVSSLSPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAITAADLSTRDAEILERKDSGSGRTVYEEQTKNWVPSTNCSTLPEESVPIQRAAKGSVIGGADCRTENGWIQFEELRQIRNNNTNNFAEKNTNNINNINNSASLQLMHCPAAALRGGGGGGGGGSQLMMNIAPITTTATVTTIMHPKSHRRSNISGNFNIIGAYTQNGVEELEEIEEELEEEEEEEEGGGGGGGGCGESETLQLFPLCSDTRNGETIGGQNGCETVENSAMNSTNLTPLQFFEFLPLKN 398
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 25643002 25646022 + CmPI595203_04g011030.1 Cmu04g1103 414688
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1103 398 SMART HOX_1 79 146 IPR001356 GO:0003677(InterPro)
Cmu04g1103 398 Pfam Homeodomain 82 141 IPR001356 GO:0003677(InterPro)
Cmu04g1103 398 Coils Coil 314 338 - -
Cmu04g1103 398 MobiDBLite consensus disorder prediction 325 345 - -
Cmu04g1103 398 Gene3D - 81 148 - -
Cmu04g1103 398 SUPERFAMILY Homeodomain-like 81 148 IPR009057 -
Cmu04g1103 398 CDD homeodomain 83 143 IPR001356 GO:0003677(InterPro)
Cmu04g1103 398 ProSiteProfiles 'Homeobox' domain profile. 87 142 IPR001356 GO:0003677(InterPro)
Cmu04g1103 398 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 76 394 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
Cmu04g1103 398 FunFam WUSCHEL-related homeobox 4 81 148 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1965 Cmu-Chr1:32916834 Cmu04g1103 Cmu-Chr4:25643002 1.50E-22 dispersed
Cmu02g2043 Cmu-Chr2:34073773 Cmu04g1103 Cmu-Chr4:25643002 2.30E-23 dispersed
Cmu03g0781 Cmu-Chr3:2000238 Cmu04g1103 Cmu-Chr4:25643002 1.70E-25 dispersed
Cmu04g1103 Cmu-Chr4:25643002 Cmu08g1547 Cmu-Chr8:27305111 1.30E-23 dispersed
Cmu01g2286 Cmu-Chr1:35138366 Cmu04g1103 Cmu-Chr4:25643002 1.10E-14 transposed
Cmu04g1103 Cmu-Chr4:25643002 Cmu06g1492 Cmu-Chr6:26204159 2.20E-42 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6033 PF00046 Homeodomain 1.60E-19 CL0123 Cmu TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1103 - - - 0.0