Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu04g1103 | ATGTGGATGATGGGTTACAATGACGCTACAGATTTGAACTTCCCTTCCGATAACTCTTTCAATTCTCGCAAACTTAGACCTCTAATTCCTCGCCCTCTCTCTTCTTCTTCCTCTTCCTCCATTAACAATCTCATCCCCACCAACGATTTCTTCTCCCAATTTCATCACATGGCGACGGTGACGGATCAAAGTAAGAGAGAGTTGAACAATGTGTCGTCGTTGTCACCGCCTGTGGTGGTGAGCTCGCGGTGGAATCCGACGCCTGAGCAGTTGAGAGTGTTGGAGGAATTGTATCGGCGGGGGACTCGAACCCCCTCTGCCGATCAAATTCAACATATCACTGCTCAGCTTCGTCGTTACGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAAAATCATAAAGCTAGAGAACGGCAGAAACGTCGTCGTCAGATGGAATCCGCCATCACTGCCGCCGACCTCTCTACTCGCGACGCCGAAATCCTAGAAAGGAAAGATTCAGGGTCGGGCAGAACAGTGTATGAAGAACAGACCAAAAACTGGGTGCCCTCTACAAACTGCAGTACACTTCCGGAGGAATCTGTTCCAATTCAAAGGGCGGCAAAAGGTAGTGTAATTGGAGGAGCAGATTGCAGAACAGAAAATGGATGGATTCAATTCGAGGAATTGCGCCAAATAAGGAATAACAACACCAACAACTTTGCTGAAAAAAATACCAATAACATCAACAATATTAACAATTCAGCCTCCTTACAATTGATGCATTGTCCGGCAGCCGCTCTACGTGGTGGCGGTGGCGGCGGCGGCGGCGGCAGCCAACTAATGATGAACATTGCCCCCATCACTACCACAGCCACAGTGACAACAATAATGCACCCAAAATCTCATAGAAGAAGTAATATTTCAGGTAATTTTAATATAATTGGAGCCTACACTCAAAATGGGGTTGAAGAATTGGAAGAAATAGAAGAAGAATTAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGGTGTGGGGAATCTGAAACCCTACAACTTTTTCCATTGTGCAGTGACACAAGAAATGGTGAGACTATTGGTGGCCAAAATGGGTGTGAAACAGTGGAAAATTCAGCCATGAATAGTACTAATCTGACTCCACTTCAGTTCTTTGAATTCCTTCCATTGAAGAATTGA | 1197 | 45.28 | MWMMGYNDATDLNFPSDNSFNSRKLRPLIPRPLSSSSSSSINNLIPTNDFFSQFHHMATVTDQSKRELNNVSSLSPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAITAADLSTRDAEILERKDSGSGRTVYEEQTKNWVPSTNCSTLPEESVPIQRAAKGSVIGGADCRTENGWIQFEELRQIRNNNTNNFAEKNTNNINNINNSASLQLMHCPAAALRGGGGGGGGGSQLMMNIAPITTTATVTTIMHPKSHRRSNISGNFNIIGAYTQNGVEELEEIEEELEEEEEEEEGGGGGGGGCGESETLQLFPLCSDTRNGETIGGQNGCETVENSAMNSTNLTPLQFFEFLPLKN | 398 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 25643002 | 25646022 | + | CmPI595203_04g011030.1 | Cmu04g1103 | 414688 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu04g1103 | 398 | SMART | HOX_1 | 79 | 146 | IPR001356 | GO:0003677(InterPro) | |
Cmu04g1103 | 398 | Pfam | Homeodomain | 82 | 141 | IPR001356 | GO:0003677(InterPro) | |
Cmu04g1103 | 398 | Coils | Coil | 314 | 338 | - | - | |
Cmu04g1103 | 398 | MobiDBLite | consensus disorder prediction | 325 | 345 | - | - | |
Cmu04g1103 | 398 | Gene3D | - | 81 | 148 | - | - | |
Cmu04g1103 | 398 | SUPERFAMILY | Homeodomain-like | 81 | 148 | IPR009057 | - | |
Cmu04g1103 | 398 | CDD | homeodomain | 83 | 143 | IPR001356 | GO:0003677(InterPro) | |
Cmu04g1103 | 398 | ProSiteProfiles | 'Homeobox' domain profile. | 87 | 142 | IPR001356 | GO:0003677(InterPro) | |
Cmu04g1103 | 398 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 76 | 394 | IPR044555 | GO:0003700(InterPro)|GO:0099402(InterPro) | |
Cmu04g1103 | 398 | FunFam | WUSCHEL-related homeobox 4 | 81 | 148 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g1965 | Cmu-Chr1:32916834 | Cmu04g1103 | Cmu-Chr4:25643002 | 1.50E-22 | dispersed | |
Cmu02g2043 | Cmu-Chr2:34073773 | Cmu04g1103 | Cmu-Chr4:25643002 | 2.30E-23 | dispersed | |
Cmu03g0781 | Cmu-Chr3:2000238 | Cmu04g1103 | Cmu-Chr4:25643002 | 1.70E-25 | dispersed | |
Cmu04g1103 | Cmu-Chr4:25643002 | Cmu08g1547 | Cmu-Chr8:27305111 | 1.30E-23 | dispersed | |
Cmu01g2286 | Cmu-Chr1:35138366 | Cmu04g1103 | Cmu-Chr4:25643002 | 1.10E-14 | transposed | |
Cmu04g1103 | Cmu-Chr4:25643002 | Cmu06g1492 | Cmu-Chr6:26204159 | 2.20E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6033 | PF00046 | Homeodomain | 1.60E-19 | CL0123 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu04g1103 | - | - | - | 0.0 |