Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1106 ATGAAGAACCTCCTTAAGAAGTTCCACATCATGTCCAGTGGTCAGTCTGACGATGCAGCTGAAGGGTCTACTTCATCGAGGAGCAGTAAATTAATGGAGGTGTCTTCGCCTGATAAGCTGCCGTCTCGCTCCCGAACGACCCATTTCAATTCGGAGCATAAACCCTTCTCGGGGTTATCCGGTTGGTTGAACTCTGTTACAAATAGGCGTAGCCCCAGTCCTCCATCATCTTCCAATCCTACTGCAGGCGAGTTAATGGAGCCATCAGATTCAGTTTCTAGCAGAGATGCTGCAATGGATACATCTAGGCATGATTCAGGGTCGAGTAACTCGAGGGATCCTGATATAGAGGAAGAGTATCAGATACAGCTTGCTTTGGAACTGAGTGCTAGAGAGGATCCTGAGGCAGCTCAGATTGAGGCTGTGAAGCAGATTAGTTTGGGGTCATGTGATCCTGATAACACTCCAGCTGAAGTTATTGCCTTCAGATATTGGTGTGATGAATGCTTCATCTTCATCCGTGAGATTGTTGTCTGCAATTGTCCTCAAGCTGTTCAGTCAAAACTTCCTGTGGCTGCAACAGTAAATGAAAAAGGAAGTTCAGAAGCTTCTGGGTTGCATGGTTTTACTGGAGAGTTCCTCATAAATTCCAGAATATTACCGAATGGGACATTAAGGTCTTTTGCAGCTTTATTGGGGCATATCTGCGTAAATTACCTCTCATATGGAGATGTCATTGGGAGGTATTCCAGAAATGTTGCCATTTGGAGACTAACTGAAGCAAGAATCTTGAGAGGATTAGATATGTGGAGAAATCATTTTCTATTAGGGAGCTTGATCTACTGCATGCCTATGTTTCATCCCAAGGAAAGTGGCTCTTATTGTAGAAGAAAAATGAGGAATTTCCTTTGGGATGGTAAAAACCAAGGGAAAATCAATCACCTAGATTTCAACATTACCTATAGAGATGGGGAATGGAGTTGCAAGATAGACTATTTGAGATTTATGCGTGCTTCACAGAATTACAATTCTCTTAGCTATGATGACAAGATCTTGGATGGCTTTTATGACCTATATGGAGTCTTCACTGAGTCCACCTCAGAAAGAATGCCTTCCCTAGTTGATCTGCAAGGAGCACCAATGTCTGACAGTGTCACTTGGGAAGCAGTTCTGATTAATAAAGCTGCTGATGCTAACTTGTTGAAACTTGAACAGACAGCATTGGAGATGGCTATCAAAATGGGGACGGAATCCCCAATTTCTGTAAATAGTTATTTGGTGCGGAAGCTTGCTGTTTTAGTTTCAGATCATATGGGGGGACCAGTAGGCGATCCTGAAAAGATGTTGAGAAAATGGCGAAATCTTAGTTACGGCTTGAAAGCAACCCTTGGCAGTATGGTTTTGCCTCTTGGCTCCCTTACTGTAGGGTTGGCCCGTCATCGTGCATTGTTATTCAAGCTTTTGGCAGATGGCGTGGGTATTCCTTGTAGGTTGGTGAAGGGACCACAGTACACAGGTTCTGATGATGTGGCGATGAACTTCGTAAAGATTGATGATGGAAGGGAGTACATTGTGGATTTAATGGCAGATCCTGGTGCACTTATTCCAGCTGATGTTGCTGGATCGCATGTAGAGTATGATGGATCCCCTTTTTCAGCCAGTCCACTTTCTAGAGATGTTGATTCTTCTCAGGCAGCATCTTCAAGCAGTGGGGTTGGCAGTTCACTAGAGGGAAATTCAGATTTTGGGATATCAGATAGGAAACCAAAGTTTCGGAATCTCAGTGCCACAAAGGAATATGATTCTCCCAATGTTGACAAGGGGCCATCACGTGATTTTGCTAGCAAATCAAATTATCCTGGCATGCACGTTAGATCACCTTCTTGGACTGAGGGTGTTAGTTCACCTGCAGTGCGCAGAATGAAAGTAAAGGATGTTTCACAATACATGATTGATGCTGCCAAAGAGAATCCACGGTTGGCTCAAAAGCTTCATGACGTGTTACTTGAAAGTGGTGTGGTTGCTCCCCCTAACTTGTTTACTGAGGCATACCCTGACCAAATAGATGTTATTGTTGAGTCTAAGTCACCAACGGAAGACAAGGATCAAAGTAGAAAGGTGCCTGGTCTCTGTGAAAGTGTAGATAAGAATGATCCTCGTCCAGCTAACTTTTTGCCTCCCTTGCCTCAGCCCAGAATGCATTCTAGAGCCAGCCCTACCCATGGCCAACAACTGCACCTTAAACCTCTGGAATTTAACCTTTCTCTCGATCCAAGAGAAGCAGCCGGACAACCTATAGCCTTACCTTTTGAGGTAACACCAGTGAAGTATGGGAGAAATGTACCTGTTGCTGCAGCAGCAGCAGCTGCCGCAGCTGTTGTTGCATCATCAATGGTGGTAGCTGCAGCAAAGAGTACCGATGCAAATCTTGAAATTCCTGTAGCAGCTGCTGCCACCGCCACTGCTGCTGCAGTGGTTGCAACAACTGCAGCAGTCAACAAGCAATATGAGCAGGTTGAGGCCGACGCTACTCTTTATGAGCTGCGTGGAAGTGGAGATAGGGAGCATGATGCTTGTGGAGAAAATTCAGAGGGTGAACGAATATCAGATAGATCAGTTGGTAACGAAAGCACAAAATCCGATATAACCCTTGATGATGTTGCAGAATGCGAGATCCCATGGGAAGAAATCTCCTTGGGAGAGCGTATTGGGCTTGGATCATATGGGGAGGTCTATCGTGGAGATTGGCATGGAACTGAGGTAGCTGTGAAGAGGTTTCTAGACCAGGACATTTCTGGCGAATCTCTTGAAGAATTCAAAAGTGAGGTTCGAATTATGAAAAGGCTTCGGCATCCGAATGTTGTTCTCTTCATGGGAGCTGTGACACGTGCTCCCCACCTTTCAATTGTTACAGAATTTCTTCCCAGAGGTAGCTTGTACAGGTTAATTCACCGTCCCAACAATCAATTAGATGAACGAAAGCGATTGAGGATGGCCCTTGATGCAGCTCGGGGAATGAATTATTTGCACAATTGCACACCTGTTGTTGTACATCGTGATTTGAAGTCCCCAAATCTACTTGTTGATAAAAATTGGGTTGTGAAGGTATGTGATTTTGGTTTATCTAAAATGAAGCATAGCACATTTCTTTCTTCAAGGTCAACGGCTGGAACTGCTGAGTGGATGGCTCCAGAAGTGCTGAGAAATGAACCTTCAGATGAAAAGTGCGACGTTTATAGTTATGGAGTCATACTATGGGAGCTGTCTACAATGCAACAACCATGGGGAGGAATGAACCCAATGCAAGTTGTTGGTGCTGTTGGCTTTCAGCATCGCCGTCTTGACATCCCAGACAATTTAGATCCTGCCATTGCCGACATTATTAGGAAATGCTGGCAAACAGATCCAAGATTAAGACCTTCATTTGCTGAGATTATGGCTGCGCTAAAGCCGCTGCAGAAGCCAATGTCGAGTTCTCAAGTACCGAGACCAAATGCTCCTGCAGTTGCAGGTGGATTGTTTGAACAGAAGATGACAAATGGGAATGGAGAAACAAAGCATTTTGTTAACAGCTTATATATTCTTTCTATCTATCTTCTTGTAGTTGTGATCATGGCTTCTCTTTTCGGATCAACTGCATTTCTCTCCCACTCACTTACCAGAACTTATCACTTAGCTTCCTCACAAACCCCTTCACCTTCAACCCCACCTTCCCAACCGCCGCAAACTCCCTCCCCATCTCCATCTCTGAGCAATTCTTCGTCGGAGCAACTAAAACCAGCCCCATCAAAGGTGGAGCAACAGAGGCCTACCACCAATTTAGACTCTACGGATTGGATTGCTTCAACTTTAACAAGGCGATTCGGGCTCGGCGCTGGCCTTGCGTGGGCTGCTTTTCTCGCCGTTGGTGTAGTCTCCGAACAGATCAAAACTCGCCTCGAAGTCTCTCAAGAAGAAGCAAATACAAGAAACGTTGAAAAGGAAGAGGAAGTAGTGCTACCCAATGGCATAAGGTATTTCGAGCTGCGCGTTGGCGGCGGTGCCACACCAAGAACCGGGGACTTGGTTGTGATTGATCTCAAGGGAAAAGTACAAGGCAGTGATGAAGTATTTGTAAATACATTTGAAAAGGAAAGTAAGCCATTGGCTCTGGTGATGGGCTCAAGACCTTACAGCAAAGGAATGTGTGAAGGTTTGGAATATGTGTTGAGATCCATGAAATCAGGTGGTAGGAGGAGAGTTATAATTCCTTCTAGTTTGGGGTTTGGAGAGAAGGGTGCTGATTTAGGTAATGGGGTTCAAATTCCTCCATTTGCAACTTTAGAGTATGTAGTTGAGATTGATAAGGTTTCCATTGCACCTGCTTGA 4368 44.83 MKNLLKKFHIMSSGQSDDAAEGSTSSRSSKLMEVSSPDKLPSRSRTTHFNSEHKPFSGLSGWLNSVTNRRSPSPPSSSNPTAGELMEPSDSVSSRDAAMDTSRHDSGSSNSRDPDIEEEYQIQLALELSAREDPEAAQIEAVKQISLGSCDPDNTPAEVIAFRYWCDECFIFIREIVVCNCPQAVQSKLPVAATVNEKGSSEASGLHGFTGEFLINSRILPNGTLRSFAALLGHICVNYLSYGDVIGRYSRNVAIWRLTEARILRGLDMWRNHFLLGSLIYCMPMFHPKESGSYCRRKMRNFLWDGKNQGKINHLDFNITYRDGEWSCKIDYLRFMRASQNYNSLSYDDKILDGFYDLYGVFTESTSERMPSLVDLQGAPMSDSVTWEAVLINKAADANLLKLEQTALEMAIKMGTESPISVNSYLVRKLAVLVSDHMGGPVGDPEKMLRKWRNLSYGLKATLGSMVLPLGSLTVGLARHRALLFKLLADGVGIPCRLVKGPQYTGSDDVAMNFVKIDDGREYIVDLMADPGALIPADVAGSHVEYDGSPFSASPLSRDVDSSQAASSSSGVGSSLEGNSDFGISDRKPKFRNLSATKEYDSPNVDKGPSRDFASKSNYPGMHVRSPSWTEGVSSPAVRRMKVKDVSQYMIDAAKENPRLAQKLHDVLLESGVVAPPNLFTEAYPDQIDVIVESKSPTEDKDQSRKVPGLCESVDKNDPRPANFLPPLPQPRMHSRASPTHGQQLHLKPLEFNLSLDPREAAGQPIALPFEVTPVKYGRNVPVAAAAAAAAAVVASSMVVAAAKSTDANLEIPVAAAATATAAAVVATTAAVNKQYEQVEADATLYELRGSGDREHDACGENSEGERISDRSVGNESTKSDITLDDVAECEIPWEEISLGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDISGESLEEFKSEVRIMKRLRHPNVVLFMGAVTRAPHLSIVTEFLPRGSLYRLIHRPNNQLDERKRLRMALDAARGMNYLHNCTPVVVHRDLKSPNLLVDKNWVVKVCDFGLSKMKHSTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVYSYGVILWELSTMQQPWGGMNPMQVVGAVGFQHRRLDIPDNLDPAIADIIRKCWQTDPRLRPSFAEIMAALKPLQKPMSSSQVPRPNAPAVAGGLFEQKMTNGNGETKHFVNSLYILSIYLLVVVIMASLFGSTAFLSHSLTRTYHLASSQTPSPSTPPSQPPQTPSPSPSLSNSSSEQLKPAPSKVEQQRPTTNLDSTDWIASTLTRRFGLGAGLAWAAFLAVGVVSEQIKTRLEVSQEEANTRNVEKEEEVVLPNGIRYFELRVGGGATPRTGDLVVIDLKGKVQGSDEVFVNTFEKESKPLALVMGSRPYSKGMCEGLEYVLRSMKSGGRRRVIIPSSLGFGEKGADLGNGVQIPPFATLEYVVEIDKVSIAPA 1455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25662839 25678203 - CmPI595203_04g011060.1 Cmu04g1106 414691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1106 1455 FunFam Peptidylprolyl isomerase 1305 1453 - -
Cmu04g1106 1455 MobiDBLite consensus disorder prediction 1233 1247 - -
Cmu04g1106 1455 MobiDBLite consensus disorder prediction 852 874 - -
Cmu04g1106 1455 MobiDBLite consensus disorder prediction 852 878 - -
Cmu04g1106 1455 FunFam Serine/threonine-protein kinase CTR1 976 1159 - -
Cmu04g1106 1455 MobiDBLite consensus disorder prediction 1 116 - -
Cmu04g1106 1455 MobiDBLite consensus disorder prediction 16 44 - -
Cmu04g1106 1455 SUPERFAMILY Protein kinase-like (PK-like) 878 1147 IPR011009 -
Cmu04g1106 1455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1016 1028 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu04g1106 1455 MobiDBLite consensus disorder prediction 97 116 - -
Cmu04g1106 1455 Coils Coil 1310 1330 - -
Cmu04g1106 1455 PRINTS Tyrosine kinase catalytic domain signature 1057 1067 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu04g1106 1455 PRINTS Tyrosine kinase catalytic domain signature 1076 1098 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu04g1106 1455 PRINTS Tyrosine kinase catalytic domain signature 971 984 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu04g1106 1455 PRINTS Tyrosine kinase catalytic domain signature 1010 1028 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu04g1106 1455 PRINTS Tyrosine kinase catalytic domain signature 1120 1142 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu04g1106 1455 Gene3D Phosphorylase Kinase; domain 1 890 974 - -
Cmu04g1106 1455 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 1348 1447 IPR001179 GO:0003755(InterPro)
Cmu04g1106 1455 ProSitePatterns Protein kinases ATP-binding region signature. 903 924 IPR017441 GO:0005524(InterPro)
Cmu04g1106 1455 Gene3D Transferase(Phosphotransferase) domain 1 976 1161 - -
Cmu04g1106 1455 SUPERFAMILY FKBP-like 1278 1450 - -
Cmu04g1106 1455 ProSiteProfiles Protein kinase domain profile. 897 1153 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g1106 1455 SMART serkin_6 897 1152 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g1106 1455 MobiDBLite consensus disorder prediction 555 581 - -
Cmu04g1106 1455 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP17-2, CHLOROPLASTIC 1205 1455 IPR053111 GO:0009507(PANTHER)
Cmu04g1106 1455 CDD STKc_MAP3K-like 903 1149 - -
Cmu04g1106 1455 MobiDBLite consensus disorder prediction 695 743 - -
Cmu04g1106 1455 Gene3D - 1313 1450 IPR046357 GO:0003755(InterPro)
Cmu04g1106 1455 MobiDBLite consensus disorder prediction 553 632 - -
Cmu04g1106 1455 MobiDBLite consensus disorder prediction 1248 1274 - -
Cmu04g1106 1455 Pfam Ethylene-responsive protein kinase Le-CTR1 341 535 - -
Cmu04g1106 1455 MobiDBLite consensus disorder prediction 1226 1274 - -
Cmu04g1106 1455 FunFam Serine/threonine-protein kinase isoform 1 888 975 - -
Cmu04g1106 1455 MobiDBLite consensus disorder prediction 51 88 - -
Cmu04g1106 1455 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 1353 1451 IPR001179 GO:0003755(InterPro)
Cmu04g1106 1455 Pfam Protein tyrosine and serine/threonine kinase 898 1149 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu04g1106 1455 MobiDBLite consensus disorder prediction 695 713 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1106 Cmu-Chr4:25662839 Cmu05g1823 Cmu-Chr5:28327169 3.40E-178 dispersed
Cmu04g1106 Cmu-Chr4:25662839 Cmu04g1017 Cmu-Chr4:24758307 6.30E-116 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75477 PF07714 PK_Tyr_Ser-Thr 9.80E-67 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1106 - - - 0.0