Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1129 ATGAAAACTTCCGTCCCTCTCTTCCTCTTCTCGTTCTCCTTCACAATCGCGTGGTTTGATCTTCAGCTCTGTTTCACCAATGACGCCAACGATGAATTTAAAGCCTGCGGTGTGTATTACAACTGGGGAAATTTGGTTAACATCTCATATCCGTTCTGGGGGAATGAGCGGAGGGAATTTTGCGGTCGGCGAGAATTTGAACTCAATTGCAAAGACAACAAAACCACAACGATTCAAATCAATTCTATCGAATATAACGTTCTGAAAATCAACCAATCGGATAATAGAATGACGATCGCAAGATCAGATCTCTTCGACGATTACTGTCCTAAAAATCAAATCGAAACGGCGACGTTGGATCATAGTCTGTTCAAGTATTCTTCGAACGATCTAAATCTGGGGGTGTGGTATGATTGCCCGCCGCAACAGGGGATTCCGGAGGAGTTCATGTTTTCGTGTGGTTGGAACGGGGAACGAAGTGGAAGAGCGAATTATGCTTTGGAGAAGAAGGATGCGATGAATTGGAGTAAAAATATTAGCGGGTGTAAGATGAACATGGAAGTGACGATTACGATGGAGGTATTGAAAGAAGGAGAAAAGAACAGAACAATGGTGGTGGAAAAGGGAATGAAAGAAGGGTTTGAAGTGGAATACGGGGATTTCTACGCCATAGCTTGCGACGGATGCAAGGAATCTGGTGGCGCGTGTGGTGGAAACGCGACTCAAGAGTTTCTGTGCATTTGTGGGAGTGGAGATGTACATCCTTACGTTTGCAAAGGAGCCCCCCCTCCTGGAGGACTGTATGTACATGAATGGAAGCAGGCCACCCTAGGATTTCCATATAAAAATGGTAGAAGGAAGCCGGACATTATTATAGGAGCAACAACTTCAGCCGGCTTCATTTTAATAATCTCCATTATCATCTTCATCTACTCCAAGAGAAAAAGAATCTCAAACAAAGACAAAATCGAGGAAATTATTAAGAGATATTCCACACAGACACCCAAGCGATACAGTTACTCCAAATTAAAGAAGATCACAGACTCTTTCAAGAACAAACTTGGCCAAGGAGGATTTAGCATTGTGTACAAAGGAAAGCTACCAAGTGGATGTGATGTGGCTGTGAAACTTTTAAATGAATCCAGACAAGAAAATGGCCAAGATTTCATCAATGAAGTTGTTAGCATAGCCAAAACTTCGCACGTAAACATAGTCACCCTCTTAGGTTTCTGCTACGAGCAGAACAAGAGGGCTTTGGTTTATGAATATATGCCTAAGGGGTCATTGGATAAGTACATATCCCACAACAGACTGCAAGAAAATGATATGAAATTGGATTGGAACACACTCTACAATGTTGTTATTGGTGTGGCACGAGGCTTAGAGTACTTGCATCGCGGTTGCATCACAAGGATTTTGCACTTTGACATCAAACCACACAACATACTTTTGGATGATGACTTCTGCCCCAAAATCTCAGATTTTGGGCTTGCCAAGCAATGCAGGCCAAAAGAAACTCATGTATCGATGACAGGTGTGAAAGGGACGGTAGGATTCATTGCACCCGAAGTAATATTCAGGAACTTTGGTAAGGTTTCTCACAAGTCTGATGTTTATAGCTATGGAATGTTGGTTCTTGAAATGGTGGGAGCAAGAAAGAACCCCAATTCCAATGACAGTGATGGAGTGGAGCAGGGCAGTGAAGAGTACTTTCCTGATTGGATATATAACAATCTTACACAAAGTGAAATAGATGGAGGGTGTTGCTGGGGAAGCACAGAGGAAGAAGAAGAAATGACAAGAAAAATGATGATTGTGGGTTTACATTGTATTCAGACATTGCCCGACGACAGGCCGTCGATGACCGATGTGGTTGCAATGTTGGAAAGCAGTGTTGATGGCTTACAGATTCCACCAAAACCCAACTTGTTTGGACCTCCAACCATTGAGCATCCCCAACCTTCTTCTTCCTCTTCATCCAATTGA 1986 42.85 MKTSVPLFLFSFSFTIAWFDLQLCFTNDANDEFKACGVYYNWGNLVNISYPFWGNERREFCGRREFELNCKDNKTTTIQINSIEYNVLKINQSDNRMTIARSDLFDDYCPKNQIETATLDHSLFKYSSNDLNLGVWYDCPPQQGIPEEFMFSCGWNGERSGRANYALEKKDAMNWSKNISGCKMNMEVTITMEVLKEGEKNRTMVVEKGMKEGFEVEYGDFYAIACDGCKESGGACGGNATQEFLCICGSGDVHPYVCKGAPPPGGLYVHEWKQATLGFPYKNGRRKPDIIIGATTSAGFILIISIIIFIYSKRKRISNKDKIEEIIKRYSTQTPKRYSYSKLKKITDSFKNKLGQGGFSIVYKGKLPSGCDVAVKLLNESRQENGQDFINEVVSIAKTSHVNIVTLLGFCYEQNKRALVYEYMPKGSLDKYISHNRLQENDMKLDWNTLYNVVIGVARGLEYLHRGCITRILHFDIKPHNILLDDDFCPKISDFGLAKQCRPKETHVSMTGVKGTVGFIAPEVIFRNFGKVSHKSDVYSYGMLVLEMVGARKNPNSNDSDGVEQGSEEYFPDWIYNNLTQSEIDGGCCWGSTEEEEEMTRKMMIVGLHCIQTLPDDRPSMTDVVAMLESSVDGLQIPPKPNLFGPPTIEHPQPSSSSSSN 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25870955 25876833 + CmPI595203_04g011290.1 Cmu04g1129 414714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1129 661 ProSiteProfiles Protein kinase domain profile. 348 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g1129 661 MobiDBLite consensus disorder prediction 636 661 - -
Cmu04g1129 661 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524(InterPro)
Cmu04g1129 661 Gene3D Phosphorylase Kinase; domain 1 320 423 - -
Cmu04g1129 661 FunFam S-receptor-like serine/threonine-protein kinase 315 423 - -
Cmu04g1129 661 Pfam Wall-associated receptor kinase galacturonan-binding 43 101 IPR025287 GO:0030247(InterPro)
Cmu04g1129 661 PANTHER RUST RESISTANCE KINASE LR10-RELATED 213 646 IPR045874 GO:0004672(InterPro)
Cmu04g1129 661 SUPERFAMILY Protein kinase-like (PK-like) 336 655 IPR011009 -
Cmu04g1129 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu04g1129 661 Gene3D Transferase(Phosphotransferase) domain 1 424 636 - -
Cmu04g1129 661 FunFam PR5-like receptor kinase 424 640 - -
Cmu04g1129 661 SMART serkin_6 348 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g1129 661 Pfam Wall-associated receptor kinase C-terminal 169 250 IPR032872 -
Cmu04g1129 661 Pfam Protein tyrosine and serine/threonine kinase 350 627 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1129 Cmu-Chr4:25870955 Cmu04g1134 Cmu-Chr4:25890939 0.00E+00 dispersed
Cmu04g1127 Cmu-Chr4:25862636 Cmu04g1129 Cmu-Chr4:25870955 4.30E-117 proximal
Cmu04g1129 Cmu-Chr4:25870955 Cmu04g1131 Cmu-Chr4:25878396 1.00E-174 proximal
Cmu04g1129 Cmu-Chr4:25870955 Cmu04g1132 Cmu-Chr4:25882010 2.90E-29 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75481 PF07714 PK_Tyr_Ser-Thr 3.00E-48 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1129 - - - 0.0