Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1134 ATGAAAACTTCCGTCCCTCTCTTCCTCTTCTCTTTCTTCTTCACAATCCTGTTGTTTGATCTTCAGCTCTGTTTCGGCGATGTCGCCAGCGAGGAATTTAAAGCTTGCGGCGTCAATTACAACTGCGGAGATTTGGTTAACATCTCATATCCGTTTTGGGGGAATAAGCGACAGGAGTTTTGTGGTCGGCGAGAATTTGGACTGAATTGCAAAGACAACAAAACCACCACGATTCAAATCAATTCCATGGAGTATAACGTCGTGAACATCAGCCAATTGGATCATAGAATGACGATCGCAAGATCAGACTTGTACGATGATTACTGCCCTAACAATCAAATCGAAGCGGCGACGTTGGATTATAGTCCATTCACGTATTCTTCAAATGATCTGAATCTGTCTGTGTGGTACGATTGTCCGGCGCTACAGGGGATTCCGCGGGATTTCACATTTGAGTGCGGATCAGAAGGGGAAAAAAGAGGGAGAGCGAATTATGCTTTAGAAGAGAGGGCGATGAATTGGAGTTCATATATGGGAGATTGTAGAATGAAAATCGAAGTGACGATTATGATGGATGTATTGAAAGAAGGGAAAATGAACAGAACGATGGTGGTGGAAAGGGGAGTGAAAGAAGGGTTTGAAGTGGAATACGGTGATTATCATACGTTAGCGTGTGAGGGATGCAAGGAATACGGCGGCGCGTGTGGTGGAAACGCGACTCAAGAGTTTCGGTGCATCTGTGGAAATGGTGATGCACATCTTTACGTTTGCACGTCTCCGCCTTCATCTGGAGCACGATATGCAAATGTTAGATGGAAGCGGAAGCTGGTCGTTGCAGGAACAATATCTTCGGCCGGCTTCATTTTAATAATCTCTATTATCATCTTCATCTACTCCAAGAGAATAAGAATCTCAAACAAAGACAAAATCGAGGAAATTATTAAGAGATATTCCACACAGACACCCAAGCGATACAGTTACTCCAAATTAAAGAAGATCACAGACTCTTTCAAGAACAAACTTGGCCAAGGAGGATTTAGCATTGTGTACAAAGGAAAGCTACCAAGTGGATGTGATGTGGCTGTGAAACTTTTAAATGAATCCAGACAAGAAAATGGCCAAGATTTCATCAATGAAGTTGTTAGCATAGCCAAAACTTCGCACGTAAACATAGTCACCCTCTTAGGTTTCTGCTACGAGCAGAACAAGAGGGCTTTGGTTTATGAATATATGCCTAAGGGGTCATTGGATAAGTACATATCCCACAACAGACTGCAAGAAAATGATATGAAATTGGATTGGAACACACTCTACAATGTTGTTATTGGTGTGGCACGAGGCTTAGAGTACTTGCATCGCGGTTGCATCACAAGGATTTTGCACTTTGACATCAAACCACACAACATACTTTTGGATGATGACTTCTGCCCCAAAATCTCAGATTTTGGGCTTGCCAAGCAATGCAGGCCAAAAGAAACTCATGTATCGATGACAGGTGTGAAAGGGACGGTAGGATTCATTGCACCCGAAGTAATATTCAGGAACTTTGGTAAGGTTTCTCACAAGTCTGATGTTTATAGCTATGGAATGTTGGTTCTTGAAATGGTGGGAGCAAGAAAGAACCCCAATTCCAATGACAGTGATGGAGTGGAGCAGGGCAGTGAAGAGTACTTTCCTGATTGGATATATAACAATCTTACACAAAGTGAAATAGATGGAGGGTGTTGCTGGGGAAGCACAGAGGAAGAAGAAGAAATGACAAGAAAAATGATGATTGTGGGTTTACATTGTATTCAGACATTGCCTGATGACAGGCCGTCGATGACCGATGTGGTTGCTATGTTGGAAAGCAGTGTTGATGGCTTACAGATTCCACCAAAACCCAACTTGTTTGGACCTCCTACGACTGATCTCCTCCAAGCTGCTGCTTCTTCTTCATCGAACTCATACTAA 1953 42.86 MKTSVPLFLFSFFFTILLFDLQLCFGDVASEEFKACGVNYNCGDLVNISYPFWGNKRQEFCGRREFGLNCKDNKTTTIQINSMEYNVVNISQLDHRMTIARSDLYDDYCPNNQIEAATLDYSPFTYSSNDLNLSVWYDCPALQGIPRDFTFECGSEGEKRGRANYALEERAMNWSSYMGDCRMKIEVTIMMDVLKEGKMNRTMVVERGVKEGFEVEYGDYHTLACEGCKEYGGACGGNATQEFRCICGNGDAHLYVCTSPPSSGARYANVRWKRKLVVAGTISSAGFILIISIIIFIYSKRIRISNKDKIEEIIKRYSTQTPKRYSYSKLKKITDSFKNKLGQGGFSIVYKGKLPSGCDVAVKLLNESRQENGQDFINEVVSIAKTSHVNIVTLLGFCYEQNKRALVYEYMPKGSLDKYISHNRLQENDMKLDWNTLYNVVIGVARGLEYLHRGCITRILHFDIKPHNILLDDDFCPKISDFGLAKQCRPKETHVSMTGVKGTVGFIAPEVIFRNFGKVSHKSDVYSYGMLVLEMVGARKNPNSNDSDGVEQGSEEYFPDWIYNNLTQSEIDGGCCWGSTEEEEEMTRKMMIVGLHCIQTLPDDRPSMTDVVAMLESSVDGLQIPPKPNLFGPPTTDLLQAAASSSSNSY 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25890939 25896092 + CmPI595203_04g011340.1 Cmu04g1134 414719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1134 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu04g1134 650 ProSiteProfiles Protein kinase domain profile. 335 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g1134 650 Gene3D Phosphorylase Kinase; domain 1 307 410 - -
Cmu04g1134 650 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524(InterPro)
Cmu04g1134 650 FunFam PR5-like receptor kinase 411 627 - -
Cmu04g1134 650 Gene3D Transferase(Phosphotransferase) domain 1 411 623 - -
Cmu04g1134 650 Pfam Wall-associated receptor kinase galacturonan-binding 41 101 IPR025287 GO:0030247(InterPro)
Cmu04g1134 650 FunFam S-receptor-like serine/threonine-protein kinase 304 410 - -
Cmu04g1134 650 Pfam Protein tyrosine and serine/threonine kinase 337 614 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu04g1134 650 PANTHER RUST RESISTANCE KINASE LR10-RELATED 265 632 IPR045874 GO:0004672(InterPro)
Cmu04g1134 650 SUPERFAMILY Protein kinase-like (PK-like) 323 636 IPR011009 -
Cmu04g1134 650 Pfam Wall-associated receptor kinase C-terminal 164 249 IPR032872 -
Cmu04g1134 650 SMART serkin_6 335 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1127 Cmu-Chr4:25862636 Cmu04g1134 Cmu-Chr4:25890939 6.50E-150 dispersed
Cmu04g1129 Cmu-Chr4:25870955 Cmu04g1134 Cmu-Chr4:25890939 0.00E+00 dispersed
Cmu04g1131 Cmu-Chr4:25878396 Cmu04g1134 Cmu-Chr4:25890939 1.90E-171 dispersed
Cmu04g1134 Cmu-Chr4:25890939 Cmu05g1787 Cmu-Chr5:27979892 8.90E-70 dispersed
Cmu07g1461 Cmu-Chr7:29756513 Cmu04g1134 Cmu-Chr4:25890939 2.50E-21 dispersed
Cmu04g1133 Cmu-Chr4:25887891 Cmu04g1134 Cmu-Chr4:25890939 4.10E-117 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75484 PF07714 PK_Tyr_Ser-Thr 2.90E-48 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1134 - - - 0.0