Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1137 ATGAGTCTAATCTTTTTCATTAGGCTTCGTTTGCACAAAAACAAGCATTCTCATGCTTCTTCCTCCATTCTCCTTCAAAACAATAATTCTCGTGATCGTCTAATGAAGGAACTTGAGAAAGGAGAAAATTACATGGCTGTTCCTCTCTTCTCTTATCAAGAACTTGTACAAGCTACAAACAAATTCAACCCAGCCAACCAACTTGGAGATGGCGGCTTTGGCACTGTCTACTCCGGCAAACTACTAGATGGGCGTGAGGTTGCAGTTAAACGATTGTTTGAAAATAACTACAGAAAAGTTGAGCATTTCCTAAATGAAGTCGAGATCCTTACTCGTTTGCACCACCCACATCTTGTCACCCTTTACGGATGCACCTCTCGACGATCTCGTGAACTCTTGTTGGTTTATGAGTTTGTACCGAACGGTACGGTCGCCGATCATCTTCACGGCATCCAAGCAAGACCAGGTGAGCTTCCATGGGTTACAAGGTTGAAGATTGCCATAGAGACAGCAAGTTCTCTGGCTTTTCTCCATGCTTCGAAAACCATCCACCGTGATGTTAAAACCACCAACATTCTCGTTGACAACAATTTCGACGTCAAAGTCGCTGATTTTGGACTGTCTCGCCTTTTTCCTACGCAAGCTACGCATGTTTCAACTGCTCCACAAGGAACTCCAGGATATGTTGATCCAGAGTATTACGAATGTTATCAACTTACGAATAAAAGCGACGTGTTTAGCTTTGGAGTCGTGTTGGTTGAGCTGATATCTTCAAAGCCAGCAGTTGATATCACAAGGCACAGACATGAGATTAACCTGTTGACGATGGCGATCAACAAGATCCAAAATGACGAATTACACGACTTTGTAGATCCATATCTTGGATTCAAAACAGATGAAAGGATCAGAGACATGATATGTGGAGTTGCAGAGTTGGCATTTCAATGCCTGCAAAGTGTGAGGGATACAAGACCCTCAATGTTTGAGGCTCTAGAAATTCTGAAGAATATAGAGTAG 1017 42.67 MSLIFFIRLRLHKNKHSHASSSILLQNNNSRDRLMKELEKGENYMAVPLFSYQELVQATNKFNPANQLGDGGFGTVYSGKLLDGREVAVKRLFENNYRKVEHFLNEVEILTRLHHPHLVTLYGCTSRRSRELLLVYEFVPNGTVADHLHGIQARPGELPWVTRLKIAIETASSLAFLHASKTIHRDVKTTNILVDNNFDVKVADFGLSRLFPTQATHVSTAPQGTPGYVDPEYYECYQLTNKSDVFSFGVVLVELISSKPAVDITRHRHEINLLTMAINKIQNDELHDFVDPYLGFKTDERIRDMICGVAELAFQCLQSVRDTRPSMFEALEILKNIE 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25899363 25900481 + CmPI595203_04g011370.1 Cmu04g1137 414722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1137 338 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 4 338 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Cmu04g1137 338 Pfam Protein kinase domain 65 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g1137 338 ProSitePatterns Protein kinases ATP-binding region signature. 68 90 IPR017441 GO:0005524(InterPro)
Cmu04g1137 338 SMART serkin_6 62 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g1137 338 ProSiteProfiles Protein kinase domain profile. 62 338 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g1137 338 Gene3D Phosphorylase Kinase; domain 1 33 138 - -
Cmu04g1137 338 Gene3D Transferase(Phosphotransferase) domain 1 139 338 - -
Cmu04g1137 338 FunFam Wall-associated receptor kinase-like 20 139 338 - -
Cmu04g1137 338 SUPERFAMILY Protein kinase-like (PK-like) 40 334 IPR011009 -
Cmu04g1137 338 PIRSF ILK 50 338 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1137 Cmu-Chr4:25899363 Cmu07g1460 Cmu-Chr7:29745676 5.40E-119 dispersed
Cmu04g1128 Cmu-Chr4:25867279 Cmu04g1137 Cmu-Chr4:25899363 2.70E-159 proximal
Cmu04g1137 Cmu-Chr4:25899363 Cmu05g2310 Cmu-Chr5:32380207 5.80E-121 wgd
Cmu04g1137 Cmu-Chr4:25899363 Cmu06g1524 Cmu-Chr6:26489284 2.30E-125 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75485 PF00069 Pkinase 1.00E-46 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1137 - - - 0.0