Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu04g1197 | ATGGGGAGAGGGAGAGTGCAATTGAAGAGGATTGAGAACAAAATTAATAGGCAAGTGACTTTCTCAAAAAGAAGGTCAGGTTTATTGAAGAAAGCTCATGAAATTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCACAAAGGGGAAGCTCTTTGAATACTCAACTGATTCTTGTATGGAGAAAATCCTTGAGCGTTATGAAAGGTATTCATATGCAGAGAGGAGACTTGTTGCAAATGATAATCAATCAAATGGAAATTGGACTCTTGAACATGCAAAGCTTAAAGCCAGAATAGAGGTTCTACAGAAAAACCACAGGCATTTCATGGGGGAAGATCTTGACTCATTGAGCCTAAAAGAACTTCAAAATATTGAGCAACAACTTGATTCTGCACTCAAGCATATAAGAGCTAGGAAGAACCAACTCATGCATGAATCCATTTCAGAGCTTCAGAAAAAGGACAAGGCACTACAAGAACAAAATAACATGTTAGCTAAGAAGATAAAGGAAAAGGAGAAATTACAAGCTCAAAATCCACAAATGGAACAGCAGCAGAATAGCCCTGCCATGGAATCTTCTCCCCTTCTTTTACCTCAGCCATTCCAATCCCTTAACATGAGTTGTCCATACTCAACACACGGCACCGGAGACGATGACTCTGCCGCGAATCATGACAGATCCAGTGCCCTCCTCCCACCGTGGATGCTCCGCCACCACCTCGGTGATTAA | 741 | 41.43 | MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERRLVANDNQSNGNWTLEHAKLKARIEVLQKNHRHFMGEDLDSLSLKELQNIEQQLDSALKHIRARKNQLMHESISELQKKDKALQEQNNMLAKKIKEKEKLQAQNPQMEQQQNSPAMESSPLLLPQPFQSLNMSCPYSTHGTGDDDSAANHDRSSALLPPWMLRHHLGD | 246 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 26520315 | 26526525 | - | CmPI595203_04g011970.1 | Cmu04g1197 | 414782 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu04g1197 | 246 | Pfam | K-box region | 84 | 172 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cmu04g1197 | 246 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu04g1197 | 246 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu04g1197 | 246 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu04g1197 | 246 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu04g1197 | 246 | ProSiteProfiles | K-box domain profile. | 88 | 178 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cmu04g1197 | 246 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 194 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cmu04g1197 | 246 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu04g1197 | 246 | SUPERFAMILY | SRF-like | 2 | 91 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu04g1197 | 246 | MobiDBLite | consensus disorder prediction | 181 | 221 | - | - | |
Cmu04g1197 | 246 | Coils | Coil | 122 | 145 | - | - | |
Cmu04g1197 | 246 | Coils | Coil | 151 | 188 | - | - | |
Cmu04g1197 | 246 | FunFam | MADS-box transcription factor MADS-MC | 13 | 86 | - | - | |
Cmu04g1197 | 246 | MobiDBLite | consensus disorder prediction | 176 | 230 | - | - | |
Cmu04g1197 | 246 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cmu04g1197 | 246 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu04g1197 | 246 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu04g1197 | 246 | Gene3D | - | 13 | 86 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g2386 | Cmu-Chr1:35858492 | Cmu04g1197 | Cmu-Chr4:26520315 | 2.50E-12 | dispersed | |
Cmu04g1197 | Cmu-Chr4:26520315 | Cmu08g0996 | Cmu-Chr8:22204622 | 3.70E-69 | dispersed | |
Cmu10g1619 | Cmu-Chr10:14684873 | Cmu04g1197 | Cmu-Chr4:26520315 | 5.40E-06 | dispersed | |
Cmu04g1197 | Cmu-Chr4:26520315 | Cmu04g1198 | Cmu-Chr4:26536181 | 1.10E-41 | tandem | |
Cmu01g2512 | Cmu-Chr1:37006895 | Cmu04g1197 | Cmu-Chr4:26520315 | 4.50E-30 | transposed | |
Cmu04g1197 | Cmu-Chr4:26520315 | Cmu07g1575 | Cmu-Chr7:30913945 | 7.80E-43 | wgd | |
Cmu04g1197 | Cmu-Chr4:26520315 | Cmu08g0995 | Cmu-Chr8:22191298 | 1.50E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6042 | PF01486 | K-box | 3.40E-30 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu04g1197 | K09264 | - | csv:101207225 | 413.305 |