Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1197 ATGGGGAGAGGGAGAGTGCAATTGAAGAGGATTGAGAACAAAATTAATAGGCAAGTGACTTTCTCAAAAAGAAGGTCAGGTTTATTGAAGAAAGCTCATGAAATTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCACAAAGGGGAAGCTCTTTGAATACTCAACTGATTCTTGTATGGAGAAAATCCTTGAGCGTTATGAAAGGTATTCATATGCAGAGAGGAGACTTGTTGCAAATGATAATCAATCAAATGGAAATTGGACTCTTGAACATGCAAAGCTTAAAGCCAGAATAGAGGTTCTACAGAAAAACCACAGGCATTTCATGGGGGAAGATCTTGACTCATTGAGCCTAAAAGAACTTCAAAATATTGAGCAACAACTTGATTCTGCACTCAAGCATATAAGAGCTAGGAAGAACCAACTCATGCATGAATCCATTTCAGAGCTTCAGAAAAAGGACAAGGCACTACAAGAACAAAATAACATGTTAGCTAAGAAGATAAAGGAAAAGGAGAAATTACAAGCTCAAAATCCACAAATGGAACAGCAGCAGAATAGCCCTGCCATGGAATCTTCTCCCCTTCTTTTACCTCAGCCATTCCAATCCCTTAACATGAGTTGTCCATACTCAACACACGGCACCGGAGACGATGACTCTGCCGCGAATCATGACAGATCCAGTGCCCTCCTCCCACCGTGGATGCTCCGCCACCACCTCGGTGATTAA 741 41.43 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERRLVANDNQSNGNWTLEHAKLKARIEVLQKNHRHFMGEDLDSLSLKELQNIEQQLDSALKHIRARKNQLMHESISELQKKDKALQEQNNMLAKKIKEKEKLQAQNPQMEQQQNSPAMESSPLLLPQPFQSLNMSCPYSTHGTGDDDSAANHDRSSALLPPWMLRHHLGD 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26520315 26526525 - CmPI595203_04g011970.1 Cmu04g1197 414782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1197 246 Pfam K-box region 84 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu04g1197 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu04g1197 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu04g1197 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu04g1197 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu04g1197 246 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu04g1197 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 194 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu04g1197 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu04g1197 246 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu04g1197 246 MobiDBLite consensus disorder prediction 181 221 - -
Cmu04g1197 246 Coils Coil 122 145 - -
Cmu04g1197 246 Coils Coil 151 188 - -
Cmu04g1197 246 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Cmu04g1197 246 MobiDBLite consensus disorder prediction 176 230 - -
Cmu04g1197 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cmu04g1197 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu04g1197 246 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu04g1197 246 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2386 Cmu-Chr1:35858492 Cmu04g1197 Cmu-Chr4:26520315 2.50E-12 dispersed
Cmu04g1197 Cmu-Chr4:26520315 Cmu08g0996 Cmu-Chr8:22204622 3.70E-69 dispersed
Cmu10g1619 Cmu-Chr10:14684873 Cmu04g1197 Cmu-Chr4:26520315 5.40E-06 dispersed
Cmu04g1197 Cmu-Chr4:26520315 Cmu04g1198 Cmu-Chr4:26536181 1.10E-41 tandem
Cmu01g2512 Cmu-Chr1:37006895 Cmu04g1197 Cmu-Chr4:26520315 4.50E-30 transposed
Cmu04g1197 Cmu-Chr4:26520315 Cmu07g1575 Cmu-Chr7:30913945 7.80E-43 wgd
Cmu04g1197 Cmu-Chr4:26520315 Cmu08g0995 Cmu-Chr8:22191298 1.50E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6042 PF01486 K-box 3.40E-30 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1197 K09264 - csv:101207225 413.305