Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1201 ATGAATTCAGACAAACACAAATTCCTAACTGTCTCAGCCGCTTTCTTTTTATCTATGATTTCTCTAATAGCGGCATTCGACTCGCTGGACCCAAATGGAAAAATCGAAATCAAGTGGGATGTCATGTACTGGACTGCAGATGGTTATGTGGCAACTGTGACTATAACAAACTCTCAGACGTATCGACATATCACGAGCCCCGGATGGACCTTGGGATGGGCATGGGCAAAGAGAGAGGTTATCTGGTCGATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCACATTTCCAGAAACTATCCCACACAGTTGCAAAAGAGATCCATCAGTGGTTGACTTACTTCCAGGTGCTCCTTATAACAAACAGGTAGCTATGTGCTGCAAAGGTGGTATTTTGACATCTTGGGGACAAGATCCTTCATCTGCTGTCTCTGCCTTTCAATTGACTGTTGGTCGTTCCGGTAGTTCAAATAAAACAGTGAGACTTCCTAAGAATTTCACCTTGTATGGTCCCGGGCTGGGTTACACATGTGGCCAAGCAAAGATTGCTCCCCCATCAGCCTTCTATTCATCTGATGGTCTGACTTGGAATGTGACATGCTCTTACTCGCAGTTTCTTGCTTCTGAAACACCAACCTGCTGTCTCTCAATGTCATCTTTCTATAACTCAAAAATCACTCCTTGTAAAGCATGTGCTTGTGGCTGCCAAGACAGAGCGACTTGTATCCGGAGTGAATCAGATCTTCAAAGCGTAACAGGATTGAATGCACCTACAAATGACAGTGCTCCATTGCTGCAGTGCACGATACATAACTGTCCAATTCAAGTCCACTGGCATGTTAAGGAAAACTACAAGGGATATTGGCGGGTCAAGATAACCATCAGCAATCTCAACTATCAATTTAACTATTCACAATGGACTCTTGTCGTTGAGCACCCCAATTTCAACAACACAGTGGAAGTTTATAGCTTTGTCCATAAGCCACTTACCCCTTTCATCTCTAAGAACGACACAGCTCTGTTCCATGGCTTAAAATCTTTCAATGATGTGCTACTTCAAGCAGGGCCAAATGGAAACGTCTACTCAGAGATGATTTTTCAGAAGGATTCAACATTTACATTGGAACAGGGCTGGGCTTTCCCTCGAAAAGTTTACTTTGATGGAGATGAATGTGTGATGCCATTTCCTGATTCTTACCCCTTCCTACCCAACTTAGCTAATGCAAATCCAATTCTATTGTCAACACTAGCTTGCATTTTGCTTCCCATATTCCTTACATTTGAAGAATGCGAGAGTGGAGTCGGCGTGGAGCAGGGATTTGGCAGTAAGGGTGCTGAACTGAAAGCACTGTGGGGTTGTTTCATAGGAGATGGAAGGCAGCTTCGAACAGACCCTTCAAGATGGAAAGCTTTATAG 1422 43.88 MNSDKHKFLTVSAAFFLSMISLIAAFDSLDPNGKIEIKWDVMYWTADGYVATVTITNSQTYRHITSPGWTLGWAWAKREVIWSMQGAEATDQGDCSTFPETIPHSCKRDPSVVDLLPGAPYNKQVAMCCKGGILTSWGQDPSSAVSAFQLTVGRSGSSNKTVRLPKNFTLYGPGLGYTCGQAKIAPPSAFYSSDGLTWNVTCSYSQFLASETPTCCLSMSSFYNSKITPCKACACGCQDRATCIRSESDLQSVTGLNAPTNDSAPLLQCTIHNCPIQVHWHVKENYKGYWRVKITISNLNYQFNYSQWTLVVEHPNFNNTVEVYSFVHKPLTPFISKNDTALFHGLKSFNDVLLQAGPNGNVYSEMIFQKDSTFTLEQGWAFPRKVYFDGDECVMPFPDSYPFLPNLANANPILLSTLACILLPIFLTFEECESGVGVEQGFGSKGAELKALWGCFIGDGRQLRTDPSRWKAL 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26570437 26573448 + CmPI595203_04g012010.1 Cmu04g1201 414786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1201 473 PANTHER PROTEIN COBRA 13 422 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Cmu04g1201 473 Pfam COBRA-like protein 49 205 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cmu04g1201 473 PIRSF COBRA 3 432 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1201 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1201 Cmu-Chr4:26570437 Cmu07g1571 Cmu-Chr7:30880123 1.20E-164 dispersed
Cmu04g1201 Cmu-Chr4:26570437 Cmu06g1601 Cmu-Chr6:27224357 3.40E-159 wgd
Cmu04g1201 Cmu-Chr4:26570437 Cmu07g1570 Cmu-Chr7:30876701 2.20E-150 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu06g1602 . 48 439 COBRA Gene Family AT5G60920 81.7 2.6e-208 721.5
Cmu07g1570 . 44 450 COBRA Gene Family AT5G60920 75.4 3.4e-200 694.5
Cmu06g1601 . 55 452 COBRA Gene Family AT5G60920 69.1 6.6e-180 627.1
Cmu07g1571 . 31 426 COBRA Gene Family AT5G60920 68.2 1.5e-179 625.9
Cmu04g1201 . 37 429 COBRA Gene Family AT5G60920 58.9 2.0e-147 519.2
Cmu05g1053 . 31 425 COBRA Gene Family AT5G60920 54.5 1.3e-130 463.4
Cmu06g1602 . 22 433 COBRA Gene Family AT3G02210 76.5 4.3e-204 707.6
Cmu07g1570 . 19 448 COBRA Gene Family AT3G02210 74.2 1.8e-202 702.2
Cmu07g1571 . 5 429 COBRA Gene Family AT3G02210 66.8 3.3e-180 628.2
Cmu06g1601 . 27 452 COBRA Gene Family AT3G02210 66.1 6.2e-179 624.0
Cmu04g1201 . 11 423 COBRA Gene Family AT3G02210 57.3 1.8e-149 526.2
Cmu05g1053 . 1 420 COBRA Gene Family AT3G02210 55.0 1.3e-139 493.4
Cmu06g1602 . 21 432 COBRA Gene Family AT3G29810 76.6 1.9e-201 698.7
Cmu07g1570 . 29 448 COBRA Gene Family AT3G29810 72.4 1.3e-194 676.0
Cmu07g1571 . 14 428 COBRA Gene Family AT3G29810 66.0 6.3e-176 614.0
Cmu06g1601 . 38 436 COBRA Gene Family AT3G29810 66.7 1.5e-174 609.4
Cmu04g1201 . 25 428 COBRA Gene Family AT3G29810 57.6 8.0e-147 517.3
Cmu05g1053 . 13 430 COBRA Gene Family AT3G29810 55.1 7.3e-140 494.2
Cmu02g0452 . 616 1026 COBRA Gene Family AT3G29810 50.1 2.2e-120 429.5
Cmu06g1601 . 32 363 COBRA Gene Family AT5G15630 83.1 4.0e-178 620.9
Cmu07g1571 . 9 339 COBRA Gene Family AT5G15630 82.5 1.7e-176 615.5
Cmu06g1602 . 31 361 COBRA Gene Family AT5G15630 73.2 1.6e-150 529.3
Cmu07g1570 . 29 358 COBRA Gene Family AT5G15630 68.5 7.6e-145 510.4
Cmu04g1201 . 15 334 COBRA Gene Family AT5G15630 59.9 4.9e-128 454.5
Cmu05g1053 . 19 341 COBRA Gene Family AT5G15630 50.3 7.7e-97 350.9
Cmu06g1602 . 19 224 COBRA Gene Family AT5G60950 57.5 3.0e-64 241.9
Cmu07g1570 . 27 220 COBRA Gene Family AT5G60950 60.0 5.1e-64 241.1
Cmu07g1571 . 27 207 COBRA Gene Family AT5G60950 57.5 1.9e-58 222.6
Cmu06g1601 . 51 231 COBRA Gene Family AT5G60950 57.5 4.2e-58 221.5
Cmu05g1053 . 12 413 COBRA Gene Family AT1G09790 60.2 7.0e-151 530.8
Cmu07g1570 . 25 428 COBRA Gene Family AT1G09790 54.0 2.7e-134 475.7
Cmu06g1601 . 41 434 COBRA Gene Family AT1G09790 53.4 3.0e-133 472.2
Cmu06g1602 . 32 432 COBRA Gene Family AT1G09790 53.3 7.3e-132 467.6
Cmu07g1571 . 3 410 COBRA Gene Family AT1G09790 51.1 9.9e-129 457.2
Cmu05g0704 . 34 643 COBRA Gene Family AT4G16120 66.7 1.2e-255 879.4
Cmu10g1369 . 59 667 COBRA Gene Family AT4G16120 54.2 7.4e-205 710.7
Cmu05g1523 . 46 662 COBRA Gene Family AT4G16120 53.1 1.5e-202 703.0
Cmu05g0704 . 11 649 COBRA Gene Family AT3G16860 63.1 3.0e-243 838.2
Cmu10g1369 . 59 656 COBRA Gene Family AT3G16860 52.8 8.9e-195 677.2
Cmu05g1523 . 40 647 COBRA Gene Family AT3G16860 51.4 5.4e-192 667.9
Cmu05g0704 . 7 639 COBRA Gene Family AT5G49270 61.0 7.1e-240 827.0
Cmu10g1369 . 59 654 COBRA Gene Family AT5G49270 52.0 3.3e-197 685.3
Cmu05g1523 . 35 642 COBRA Gene Family AT5G49270 51.4 6.5e-193 671.0
Cmu10g1369 . 55 674 COBRA Gene Family AT3G20580 62.6 1.1e-248 856.3
Cmu05g1523 . 12 662 COBRA Gene Family AT3G20580 60.0 3.2e-248 854.7
Cmu05g0704 . 27 627 COBRA Gene Family AT3G20580 54.9 3.0e-206 715.3
Cmu10g1369 . 59 675 COBRA Gene Family AT4G27110 63.1 2.0e-242 835.5
Cmu05g1523 . 40 653 COBRA Gene Family AT4G27110 59.6 1.4e-227 786.2
Cmu05g0704 . 24 645 COBRA Gene Family AT4G27110 51.9 2.3e-198 689.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001485 1 3 2 1 2 2 4 2 2 1 2 2 4 3 3 4 3 2 4 2 3 2 3 3 3 3 2 2 2 1 73