Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1201 ATGAATTCAGACAAACACAAATTCCTAACTGTCTCAGCCGCTTTCTTTTTATCTATGATTTCTCTAATAGCGGCATTCGACTCGCTGGACCCAAATGGAAAAATCGAAATCAAGTGGGATGTCATGTACTGGACTGCAGATGGTTATGTGGCAACTGTGACTATAACAAACTCTCAGACGTATCGACATATCACGAGCCCCGGATGGACCTTGGGATGGGCATGGGCAAAGAGAGAGGTTATCTGGTCGATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCACATTTCCAGAAACTATCCCACACAGTTGCAAAAGAGATCCATCAGTGGTTGACTTACTTCCAGGTGCTCCTTATAACAAACAGGTAGCTATGTGCTGCAAAGGTGGTATTTTGACATCTTGGGGACAAGATCCTTCATCTGCTGTCTCTGCCTTTCAATTGACTGTTGGTCGTTCCGGTAGTTCAAATAAAACAGTGAGACTTCCTAAGAATTTCACCTTGTATGGTCCCGGGCTGGGTTACACATGTGGCCAAGCAAAGATTGCTCCCCCATCAGCCTTCTATTCATCTGATGGTCTGACTTGGAATGTGACATGCTCTTACTCGCAGTTTCTTGCTTCTGAAACACCAACCTGCTGTCTCTCAATGTCATCTTTCTATAACTCAAAAATCACTCCTTGTAAAGCATGTGCTTGTGGCTGCCAAGACAGAGCGACTTGTATCCGGAGTGAATCAGATCTTCAAAGCGTAACAGGATTGAATGCACCTACAAATGACAGTGCTCCATTGCTGCAGTGCACGATACATAACTGTCCAATTCAAGTCCACTGGCATGTTAAGGAAAACTACAAGGGATATTGGCGGGTCAAGATAACCATCAGCAATCTCAACTATCAATTTAACTATTCACAATGGACTCTTGTCGTTGAGCACCCCAATTTCAACAACACAGTGGAAGTTTATAGCTTTGTCCATAAGCCACTTACCCCTTTCATCTCTAAGAACGACACAGCTCTGTTCCATGGCTTAAAATCTTTCAATGATGTGCTACTTCAAGCAGGGCCAAATGGAAACGTCTACTCAGAGATGATTTTTCAGAAGGATTCAACATTTACATTGGAACAGGGCTGGGCTTTCCCTCGAAAAGTTTACTTTGATGGAGATGAATGTGTGATGCCATTTCCTGATTCTTACCCCTTCCTACCCAACTTAGCTAATGCAAATCCAATTCTATTGTCAACACTAGCTTGCATTTTGCTTCCCATATTCCTTACATTTGAAGAATGCGAGAGTGGAGTCGGCGTGGAGCAGGGATTTGGCAGTAAGGGTGCTGAACTGAAAGCACTGTGGGGTTGTTTCATAGGAGATGGAAGGCAGCTTCGAACAGACCCTTCAAGATGGAAAGCTTTATAG 1422 43.88 MNSDKHKFLTVSAAFFLSMISLIAAFDSLDPNGKIEIKWDVMYWTADGYVATVTITNSQTYRHITSPGWTLGWAWAKREVIWSMQGAEATDQGDCSTFPETIPHSCKRDPSVVDLLPGAPYNKQVAMCCKGGILTSWGQDPSSAVSAFQLTVGRSGSSNKTVRLPKNFTLYGPGLGYTCGQAKIAPPSAFYSSDGLTWNVTCSYSQFLASETPTCCLSMSSFYNSKITPCKACACGCQDRATCIRSESDLQSVTGLNAPTNDSAPLLQCTIHNCPIQVHWHVKENYKGYWRVKITISNLNYQFNYSQWTLVVEHPNFNNTVEVYSFVHKPLTPFISKNDTALFHGLKSFNDVLLQAGPNGNVYSEMIFQKDSTFTLEQGWAFPRKVYFDGDECVMPFPDSYPFLPNLANANPILLSTLACILLPIFLTFEECESGVGVEQGFGSKGAELKALWGCFIGDGRQLRTDPSRWKAL 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26570437 26573448 + CmPI595203_04g012010.1 Cmu04g1201 414786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1201 473 PANTHER PROTEIN COBRA 13 422 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Cmu04g1201 473 Pfam COBRA-like protein 49 205 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cmu04g1201 473 PIRSF COBRA 3 432 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1201 Cmu-Chr4:26570437 Cmu07g1571 Cmu-Chr7:30880123 1.20E-164 dispersed
Cmu04g1201 Cmu-Chr4:26570437 Cmu06g1601 Cmu-Chr6:27224357 3.40E-159 wgd
Cmu04g1201 Cmu-Chr4:26570437 Cmu07g1570 Cmu-Chr7:30876701 2.20E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1201 - - - 0.0