Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1202 ATGGCTGCAAGTGCTGCTGCTTCAGCTACAATGACACCGCTGAATGTTGATGTTCCACCTAATAAGCTTATGGAGCTCGTTGCAAAGGGTCTTGCGGTGGAGAAAGATGAGATATTAAGAGGGAATCCTGCTTCTGCATTGTTTGAATTTGGTTCATCAGTGCCCACTACATTTGGATCTACAGAGCCCTCTCGTGCTACTGCCATCGACTTCAGCTCTGCGCACGATACAAAAGGTTCGTCAAAGAATTTTCCAAAGCATGAGACTCGACATCTTTCGGAGCATAAGAATGTTGCCAGATGTGCAAGATTCAGTGCTGATGGGAGATTTGTTGCAACTGGAAGCGCGGATATGTCAATAAAGCTGTTTGAGGTGGCAAAGATCAAGCAGATGATGCTGCCAGATGCGAAAGATGGTCCTGTCCGACCTGTTATAAGGACATTTTATGATCACATTCAACCAATAAATGATTTAGATTTTCATCCTCAGAATACTGTTCTTATATCTGGTGCAAAAGATCACACCATAAAGTTCTTTGACTTCTCCAAATTGACTGCAAAGAAAGCATTTAGAGTTATCCAGGATACGCATAACGTGCGTTCTATATCTCTTCATCCTTCAGGAGATTATCTTTTAGCAGGAACGGATCATCCGATTGCCCACCTGTATGATGTCAATACTTTTCAGTGTTTTCTATCTGCAAATGTTCCAGAAATAGGAAATAATGGGGCCATAAATCAGGTCAGGTATTCAGCAACAGGTAGTATGTATGTCACTGCGTCAAAAGATGGTGCAGTTCGTTTATGGGACGGCATTAGTGCAAAATGTCTTCGCTCCATTGTTAGTGCACATGGCACAGCAGAGGCAACCAGTGCAAAATTTACAAAGGATGAAAGGTATGTTCTTTCTTGTGGAAAGGACTCGAGTGTAAAGCTCTGGGATGTTGGGACGGGGAGACTGGTCAAACAATATGTTGGAGCTACTCATATGCAACTGAGGTGTCAGGCTGTCTTCAATGATACTGAGGAGTTTGTGCTATCAATAGACGAACCAAGCAATGAGATTGTTATCTGGGATGCTTTGACAGCAGAGAGAGTAGCAAGGTGGCCTTCAAACCATGTCGGTGCACCACGGTGGCTCGAGCACTCTCCAACAGAGTCAGCCTTCATTTCCTGTGGGACCGATAAATCGATACGTTTTTGGAAGGAAACTCTCTAG 1218 43.76 MAASAAASATMTPLNVDVPPNKLMELVAKGLAVEKDEILRGNPASALFEFGSSVPTTFGSTEPSRATAIDFSSAHDTKGSSKNFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDAKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSANVPEIGNNGAINQVRYSATGSMYVTASKDGAVRLWDGISAKCLRSIVSAHGTAEATSAKFTKDERYVLSCGKDSSVKLWDVGTGRLVKQYVGATHMQLRCQAVFNDTEEFVLSIDEPSNEIVIWDALTAERVARWPSNHVGAPRWLEHSPTESAFISCGTDKSIRFWKETL 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26573635 26578410 + CmPI595203_04g012020.1 Cmu04g1202 414787

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1202 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 148 182 - -
Cmu04g1202 405 PRINTS G protein beta WD-40 repeat signature 257 271 IPR020472 -
Cmu04g1202 405 PRINTS G protein beta WD-40 repeat signature 301 315 IPR020472 -
Cmu04g1202 405 PRINTS G protein beta WD-40 repeat signature 389 403 IPR020472 -
Cmu04g1202 405 SUPERFAMILY WD40 repeat-like 84 402 IPR036322 GO:0005515(InterPro)
Cmu04g1202 405 SMART WD40_4 362 402 IPR001680 GO:0005515(InterPro)
Cmu04g1202 405 SMART WD40_4 273 314 IPR001680 GO:0005515(InterPro)
Cmu04g1202 405 SMART WD40_4 85 124 IPR001680 GO:0005515(InterPro)
Cmu04g1202 405 SMART WD40_4 186 224 IPR001680 GO:0005515(InterPro)
Cmu04g1202 405 SMART WD40_4 227 270 IPR001680 GO:0005515(InterPro)
Cmu04g1202 405 SMART WD40_4 141 180 IPR001680 GO:0005515(InterPro)
Cmu04g1202 405 Gene3D - 72 404 IPR015943 GO:0005515(InterPro)
Cmu04g1202 405 FunFam Cleavage stimulation factor subunit 50 75 405 - -
Cmu04g1202 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 92 133 IPR001680 GO:0005515(InterPro)
Cmu04g1202 405 CDD WD40 88 402 - -
Cmu04g1202 405 ProSitePatterns Trp-Asp (WD) repeats signature. 301 315 IPR019775 -
Cmu04g1202 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 238 279 IPR001680 GO:0005515(InterPro)
Cmu04g1202 405 MobiDBLite consensus disorder prediction 73 92 - -
Cmu04g1202 405 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 2 404 IPR044633 GO:0003723(PANTHER)|GO:0005848(InterPro)|GO:0005848(PANTHER)|GO:0031124(InterPro)
Cmu04g1202 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 238 270 - -
Cmu04g1202 405 Pfam WD domain, G-beta repeat 380 401 IPR001680 GO:0005515(InterPro)
Cmu04g1202 405 Pfam WD domain, G-beta repeat 196 216 IPR001680 GO:0005515(InterPro)
Cmu04g1202 405 Pfam WD domain, G-beta repeat 240 270 IPR001680 GO:0005515(InterPro)
Cmu04g1202 405 Pfam WD domain, G-beta repeat 275 314 IPR001680 GO:0005515(InterPro)
Cmu04g1202 405 Pfam WD domain, G-beta repeat 145 180 IPR001680 GO:0005515(InterPro)
Cmu04g1202 405 Pfam WD domain, G-beta repeat 89 123 IPR001680 GO:0005515(InterPro)
Cmu04g1202 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 148 189 IPR001680 GO:0005515(InterPro)
Cmu04g1202 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 290 323 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1202 K14406 - - csv:101206503 780.785
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g446 . . Bda06g00513 . Bpe12g00518 . . . Cmo13g01107 . Cma10g00289 Cma11g00218 Car10g00271 Car11g00197 Sed08g0288 . Cpe04g01449 Bhi02g00081 Tan09g2023 Cmetu02g0745 . Hepe09g0285 . . Cla06g01531 Cam06g1688 Cec06g1750 Cco06g1748 Clacu06g1655 Cmu06g1602 Cre06g2414 . . Cone13ag0029 . . . Chy12g01483 Cme12g01924 . . . . . . . . . Cmo10g00308 Cmo11g00221 Cma13g01062 . Car13g00898 . . Cpe18g00713 Bhi08g01067 . . Lac10g0179 Hepe07g2448 . . Cla04g01143 Cam04g1196 Cec01g1708 Cco01g1753 Clacu04g1222 Cmu04g1202 Cre01g1500 Lsi06g01402 Csa01g00341 Chy02g02401 Cme02g01813
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009578 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 32