Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1203 ATGATTAAAATTAAAGGGGCCAAGGATGTAGAAGCCTTTACTGTGCTAGCAATAATGGAGACAGCGTTTCAACCGAACTCGTCTACAATCACCGATCGTGCTGGCCGTCGCGCCGCCAGGTGTATCGCCGTGCGATTTTCTCTCCGTCTCTCTGTATCTTGCATTCTTTTTTCTCTCAACTCCGCTGATGGTTGGCCGGCTGCCGCACAACACGCTCTCAGTCGTTGGAATCGCCCAGGCGTCGTCGAATCTTTCGCCTTCAGCAGGCAGTTCGCAGTGAGGAGCTTGGGTAAGAATTTTCCTTCACGTTTCTTGTCTCTACTTGTTACCCATGAGGAATTGACTCCGAATTTGGTTACCTTTGATGTTTTGCCCTTAGATTTAAGGGATTGGAGGATTTTAGCACGCTACCAGCGAATTAAGCTTTTTCGGCAGAAATCAGTGGGTAGTGCCATGGAAGAAGAGATCGGAGAAGAATTCAAGAGGAGTGGTTTCACGTTCGATGAAGAGGAAGAGATTCTCCAAAAATGTGTTACGTTCTGTGTTAATTACAATCTAAAGCCTTCAGATATTGTTTCTAGCTGGGAGGTCTACTATCTCAACAGGCAATTAGATGGGTCATTGGTGCAAATTGAACAGATGGATGGGTTCTTACAACATTTACAGAATGAGCAAAAAGAAGCAGTCATTAAAGGGGAACCAGATCTTCATGTTTACTCGAGCAAAGATGTGGAAGCGATTTTGAATGATGAGGATGAAGATCTAAATGGAGACATTCTTAAGACTCCAAATGGGAAATCTCAGAGCCTCCACAAAGAGCGATTGGGTTTGACACCTTACACGAATGAAGGCTTGTTCTCCTCGGGAAAGCCTTCAAAGCATGTTACACCCTTTGGCCAAAGAACAGAGAAGTTTGTTGTGAGGCTCAACATTAATAGCATGCCTGATAAGGTGACGGCTGAAAAGGAAGATAATTGCGAGAATGATGAAGATGCAATCATCAAGAAGGTTCGACCCCTGCAAGGATGCTTATTGACAGTCCATGGATCAGGATTTGGACTTGAACCAAATTGCAGGTTCATGTATGACAAGGATGAAGATAGGTTTAATGCTCTTGATAACCGAATCATGAGGCATGCTAAAGCTCTTGCTGCATCTGGGCTCTACGAAGAAGCAGTGGACCCTACAGTTGCTTCACAGAAAAACATGTTTGCAGTGGGCATGATTTATTGTGATGGTGAAGGACACTTGAACGATAAGTCCACCTTGTTGCAAAGCAGTATCACGCATTCAGGGGGGCAGCGAGTTCGTCTAGAATTACAACACTTAAGCCAATTTTCAATCTTTCCTGGCCAGGTAGTAGGTATTGAAGGGCATAATCCTAGTGGACACTGCTTGATTGCGTCCAAACTTGTAGATTCTTTTCCTCTGTCTGCCACTATAGACCCCATTCTGCCTCCAGCAAAGAAGATAGCTTTGAACCATGATATCCAACCAATTAATCAATCCTCTACACCGTCAGAATTATCGATGATCATTGCATCCGGCCCCTATACAACAACGGACAACTTATTGTTTGAGCCTTTGAATGAGTTATTAGCATATGCAAAAAGAAAAGTTCCCCAGCTACTAATATTGCTTGGACCATTTGTTGATTCTGAACATTCTGATATCAAGAGAGGAACTGTAGAGATGAGCTTTGAGGAAATTTTCAACTTTGAAGTTTTAAGAAGGGTACAAGATTATGCAGAACACATGGGTCCTGATGCACGTGTACTGTTGATGCCATCTACAAGGGATGCTCATCACGACTTTGTTTTTCCTCAGCCTGCTTTTGACATTCCATCTGATCTCAGACTTCAGATATCCAGTCTCCCAAACCCATGCATTTTGGAAGCAAATCAGGCAACGATAGCCTGCTGCACCATGGATATTCTCAGACACCTTAGTGGAGAAGAGCTGTCAAGAAACCTAACTAAGGGAGCAACCAACGACCGCCTGAGCACACTTGCAAGTCATATACTTCGCCAGCGCAGCTTTTATCCTCTATACCCTCCAGCCGAAGGAGTTCCACTAGACTTTTCACTTGCCCCAAAAGCTCTTGACATTGCTGTAATACCCGATATTCTCATTCTTCCATCCGACATGAAACACTTCGTGAAGGTCATATCCCTTGGTGAAGGAGGTCCAGAGGAAGAGCAAGCGAGATGCATATGTGTGAATCCTGGAAGATTGGCCAAGGGTGAAGGAGGAGTTTCAACATGGCGCTTAAGTTCCAGCAAGAAAGGCGGAGGTGAAATGCACGAGGGCGGAGCAAGAACCTTGAGGGATGACATTTTTATAAAGAGTATTTTGCTTGAACCTACCCGTGGAAACACGAGAATTGGCGTTGCATTTATTGCTTCTTCAAAGTGA 2415 44.31 MIKIKGAKDVEAFTVLAIMETAFQPNSSTITDRAGRRAARCIAVRFSLRLSVSCILFSLNSADGWPAAAQHALSRWNRPGVVESFAFSRQFAVRSLGKNFPSRFLSLLVTHEELTPNLVTFDVLPLDLRDWRILARYQRIKLFRQKSVGSAMEEEIGEEFKRSGFTFDEEEEILQKCVTFCVNYNLKPSDIVSSWEVYYLNRQLDGSLVQIEQMDGFLQHLQNEQKEAVIKGEPDLHVYSSKDVEAILNDEDEDLNGDILKTPNGKSQSLHKERLGLTPYTNEGLFSSGKPSKHVTPFGQRTEKFVVRLNINSMPDKVTAEKEDNCENDEDAIIKKVRPLQGCLLTVHGSGFGLEPNCRFMYDKDEDRFNALDNRIMRHAKALAASGLYEEAVDPTVASQKNMFAVGMIYCDGEGHLNDKSTLLQSSITHSGGQRVRLELQHLSQFSIFPGQVVGIEGHNPSGHCLIASKLVDSFPLSATIDPILPPAKKIALNHDIQPINQSSTPSELSMIIASGPYTTTDNLLFEPLNELLAYAKRKVPQLLILLGPFVDSEHSDIKRGTVEMSFEEIFNFEVLRRVQDYAEHMGPDARVLLMPSTRDAHHDFVFPQPAFDIPSDLRLQISSLPNPCILEANQATIACCTMDILRHLSGEELSRNLTKGATNDRLSTLASHILRQRSFYPLYPPAEGVPLDFSLAPKALDIAVIPDILILPSDMKHFVKVISLGEGGPEEEQARCICVNPGRLAKGEGGVSTWRLSSSKKGGGEMHEGGARTLRDDIFIKSILLEPTRGNTRIGVAFIASSK 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26578863 26590276 - CmPI595203_04g012030.1 Cmu04g1203 414788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1203 804 Gene3D - 664 779 - -
Cmu04g1203 804 Gene3D - 490 661 - -
Cmu04g1203 804 Pfam DNA polymerase alpha/epsilon subunit B 512 721 IPR007185 GO:0003677(InterPro)|GO:0006260(InterPro)
Cmu04g1203 804 FunFam DNA polymerase alpha subunit B 492 656 - -
Cmu04g1203 804 Pfam DNA polymerase alpha subunit B, OB domain 372 472 IPR054300 -
Cmu04g1203 804 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 153 761 IPR016722 GO:0005658(PANTHER)|GO:0006270(PANTHER)
Cmu04g1203 804 Pfam DNA polymerase alpha subunit B N-terminal 154 203 IPR013627 -
Cmu04g1203 804 FunFam DNA polymerase alpha subunit B 151 225 - -
Cmu04g1203 804 Gene3D - 150 228 IPR043034 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1203 K02321 - csv:101206268 1135.55