Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1244 ATGGCGCTGTTTAGAAAATTATTCTACCGGAAGCCTCCAGATCGGCTTCTCGAGATCGCGGAGAGAGTGTACGTGTTTGATTGTTGCTTCTCTACCGAGGTGTTGGAGGAGGATGAGTACAGAGTGTACTTGGGTAGCATTATACCAAAGCTGCAAGACCACTTTCCGGATGCATCTTTCATGGTGTTTAACTTTAGTGAACGAAAGAGGAAGACTAAAACTTCGGATATCCTGTCTCAATATGGTATGACAGTGATGGAATATCCTCTTCAATATGAAGGGTGTTCACTACTGCCATTGGAGATGATCCACCACTTCATTCGGTCGAGTGAAAGTTGGTTGTCATTGGAGAGACAGAAAAATGTATTGTTGATGAACTGTGAACGAGGCGGATGGCCAATCCTTGCTTTCATGCTTTCAGGTCTTTTATTGTACCGTAAACAATATGAGGGGGAGCAGAAGACCCTTGAAATGGTCTATAGGCAAGCTCCTAGAGAACTTTTCCGTGTCCTATCTCCTGTTAACTCACAGCCTTCTCAAATGAGATACCTTCAGTATATTTCTAGGAGAAATTTAGGTTCTGATTGGCCTCCACCTGATACACCCCTAATTTTAGACTGTCTGATACTTCGAGAGCTTCCTATGCTTGGTGGAGGAAAAGGGTGGAGGCCTATCATACGCATTTACAGTCAGGACCCATTAACACCACGAAATAGAAGCCCAAAACTTGTCTTCTCGAGCGCAAAGAAGGAAAGACATGGTTGCCAGTATCTACAGGCAGCAAGCAGATTAGTAAAAGTGGATGTCCATTGTCACATTCAAGGTGATGTTGTTCTTGAATGCATCCGTTTAGATGGAGATCTAATACATGAGGAAGTGATGTTTAGAATTATGTTTCACACCGCATTTGTGCATTCAAACAGTTTGAAGCTCAATTGTGACGAGGTTGATGTTTTATGGGATGCCAAGGAGCAGTTTTCTAAAGATTTTAGAGCAGAGGTACTTTTTCTGGATGCTAATCATGTTGTGCCAAACAACCGTCCCTCGACCAGAAGTGATGATAAAATTGAGATTGAAAGCAATTCAACTGAGGAATTTTTTGAAGTGGAAGAAATATTTAGCAATATTGTTGACGTGCAGGAAGTTAAGAGGGATTATGATGTTCAAGCAGTACATGCTAACGAAACAGATTATATTGACCATCAACCAGTTTGGAAGGAGGATGCAGATCCTCCTACATTCCAACGCTGTAAATCATTTGGAGGGAGTCAAAACTTGGACAAGAAGATAGATTGTAACGTTGAAGCAGTGAAGGACATTACTGTTGATGATGTAACTTTCAAGACAGCTGAAAAAGTGGACTCTGGTCTTCAAGTAGTGAAGGACATTGTTGTGGATTATGGAGATAAGAAGCCAAATCCTCTGCTATTTTCTGTTAATGTACTGAGACGTATGGCAATCAAGGAACTGATTGATGATGCTTATGACAAGTTGGAAGGGGTGCAGCATAAAGGGTACGGAGAAGATACTGCCATTCCACACTTTGAATCAAAGGTTCCTTCGAAAAAGTTGGAAGCTGATGCGTGGAGGCTTAAATTTGAGAAGTTGCAATCAACGTCAAGGAAACAGCCGTCATCAACAATTAAGCCAATAAATCATGCAATTGTAGCTAAACAGAAAACCGAACAGCCAGAAGATCAGTTTCTTGTAAAACAGGCCAAACCAAATACTCTTTCTAGATTGATTTCACATGACAAAGAACCTTACACAAACTCCATGCATTTGTTTTATCCACCATCAAGGCATACTGGTGACTCAGCAACAGCTATTAGTTCTCCTACTAAAGATTTTTATTCATATTCAACTTTAAAATCTGCTTCTGCTTCTGCTACTTCAGGACTGCTGCTGTCTGATACAGCTGATGAACAAAAAAGTGACAAGGTGAGTCCTAAGAAACCTTTATGTTCTGCAACAGAGATTCTCAAGAGTAAACCACAATCACCACTTGACTCCTCAAGACCATTGCCAAACGCTGTTCACCATCAAGATCCTACTCTTCCTCTATCTGCTACTACACTTCTACAGCCACCAGCTCTTCAGGCCAACACATCTTTCTTGCATGCATCATCTCCTAAATCTTCTTTGTCTCCCTCTACACATTATCACAAAAATGCAAGATCTCCTCCTCCGGCTCCGCCTCCACCACCACCTCCTCCACCTAAAAGTTCATCATTAGTGTGTGGAAATACACTTAAGCATAGTGCTCCACCAGCACCACCTCCACCTCCCATACGTAGAGCTCAACCACAATTACCTCCCCCACGACCACCCTCATCACATGGAGCTCTGCTTTCTCCATGCCTATCAAATGCTGGAGCTTTTCCACCACCCCCTCCGCCACCTCCTCCAATTCAGAGGAGAGCTCCTCCACATTTAACCCAGGGGCAACAGGCTTTAACATCTGCAACAGCCTGTGTTGTCTCATCTTCCCTGCCATCTCCAATTTGTGAAGCACCATCACCTGCTCAACCTACAACTGGTCCCCTTCCCCCGGTTCCTTCTTCTTCTTCTAAACCTTCAGGAGGTATGACTCCACACCTGGGAGCTAAAGGAGTAAGTTCTTCAACTGATGTGAAAACATCATCTATAGTGAGGGGACGTGGGTTCTCGCGGTCAATTGGGATGGGGCTGGCTACTACAGGGCTTCAACGATCATCATTGAAACCTCTGCATTGGAGCAAGGTGACTCGGGTACTACAAGGGAGCTTATGGGAAGAATTGCAAAGATGCGGAGATTCTGAAAGTGCACCAGAATTTGATGTATCTGAGCTGGAGACGCTTTTCTCTGTGATTGTCCCTAAACCTATTGTTGATTCCGGAGGTAAATCTGGAGGACGAAGGAAGTCAGTTGGATCAAAATTGGACAAAGTTCACTTGATTGATCTTAGGAGGGCAAATAACACTGAAATCATGCTAACAAAAGTTAGGATGCCACTATCTGATATGATGGCAGCAGTACTCTCCATGGATGAGTCAGTACTAGATGTAGATCAAGTGGAAAATCTTATCAAATTTTGCCCCACCAAAGAGGAGATGGAGCTTCTCAAGGGATACTCTGGTGACAAGGATAAACTTGGCAAGTGCGAACAGTACTTTTTGGAGATGATGCAAGTTCCTCGTGTGGAGTCAAAGTTAAGAGTGTTTTCTTTCAAGATTCACTTCAGCTCTCAGATAGCAGAGTTCAAAAAAAGCCTAAACACTGTAAACTCTGTCTGTCAAGAGGTGAAGAATTCTCGCAAATTGAAGGAGATAATGAAGAGAATTCTTTGCCTGGGAAATATGCTGAACCAAGGAACAGCTAGGGGTTCGGCAATTGGATTCAGGTTGGATAGCCTCTCAAAACTCACTGATACACGTGCTTCTAACAATAAGTTGACTCTCATGCATTATCTGTGTAAGGTCCTTGCTTCGAAGTCACCATCACTTCTTGATTTTCATCTGGACCTTGGTAGCTTAGAAGCTGCGTCTAAGATACAATTGAAATCTTTGGCAGAAGAAATGCAGGCAATAACAAAAGGATTGGAAAAGGTGAAGCAGGAACTGGTTGCATCTGAAAGCGATGGCCCCATCTCTGAAACTTTTCATAAGATATTGGAAGGATTTGTTACTCTTGCCGAGATGGAGGTGGAATCTGTGACAGTTCTTTACTCAGTGGCGGGTAGAAATGCTGATGCACTTGCACTATATTTTGGCGAGGATCCTGCCCGTTGTCCATTTGAACAAGTTACAGGAACCCTCTTCCATTTTACAAGGTCCTTTTTGAAAGCACATGAAGAGAACTGCAAGCATTCAATCTGGGGGTTGCAATGGAGATGGACAATATGGCACCCGAGCATGTCAGAAAGATCCTCTTTAAACAAGAATGATACAAAACAGAGTTTGGAGCTGGCAGAAACTTTAGCCTCCCATAAGGGTTATTCTAAGACCTGGATCATACCATGCTGTGCCGAACACTGA 4017 43.07 MALFRKLFYRKPPDRLLEIAERVYVFDCCFSTEVLEEDEYRVYLGSIIPKLQDHFPDASFMVFNFSERKRKTKTSDILSQYGMTVMEYPLQYEGCSLLPLEMIHHFIRSSESWLSLERQKNVLLMNCERGGWPILAFMLSGLLLYRKQYEGEQKTLEMVYRQAPRELFRVLSPVNSQPSQMRYLQYISRRNLGSDWPPPDTPLILDCLILRELPMLGGGKGWRPIIRIYSQDPLTPRNRSPKLVFSSAKKERHGCQYLQAASRLVKVDVHCHIQGDVVLECIRLDGDLIHEEVMFRIMFHTAFVHSNSLKLNCDEVDVLWDAKEQFSKDFRAEVLFLDANHVVPNNRPSTRSDDKIEIESNSTEEFFEVEEIFSNIVDVQEVKRDYDVQAVHANETDYIDHQPVWKEDADPPTFQRCKSFGGSQNLDKKIDCNVEAVKDITVDDVTFKTAEKVDSGLQVVKDIVVDYGDKKPNPLLFSVNVLRRMAIKELIDDAYDKLEGVQHKGYGEDTAIPHFESKVPSKKLEADAWRLKFEKLQSTSRKQPSSTIKPINHAIVAKQKTEQPEDQFLVKQAKPNTLSRLISHDKEPYTNSMHLFYPPSRHTGDSATAISSPTKDFYSYSTLKSASASATSGLLLSDTADEQKSDKVSPKKPLCSATEILKSKPQSPLDSSRPLPNAVHHQDPTLPLSATTLLQPPALQANTSFLHASSPKSSLSPSTHYHKNARSPPPAPPPPPPPPPKSSSLVCGNTLKHSAPPAPPPPPIRRAQPQLPPPRPPSSHGALLSPCLSNAGAFPPPPPPPPPIQRRAPPHLTQGQQALTSATACVVSSSLPSPICEAPSPAQPTTGPLPPVPSSSSKPSGGMTPHLGAKGVSSSTDVKTSSIVRGRGFSRSIGMGLATTGLQRSSLKPLHWSKVTRVLQGSLWEELQRCGDSESAPEFDVSELETLFSVIVPKPIVDSGGKSGGRRKSVGSKLDKVHLIDLRRANNTEIMLTKVRMPLSDMMAAVLSMDESVLDVDQVENLIKFCPTKEEMELLKGYSGDKDKLGKCEQYFLEMMQVPRVESKLRVFSFKIHFSSQIAEFKKSLNTVNSVCQEVKNSRKLKEIMKRILCLGNMLNQGTARGSAIGFRLDSLSKLTDTRASNNKLTLMHYLCKVLASKSPSLLDFHLDLGSLEAASKIQLKSLAEEMQAITKGLEKVKQELVASESDGPISETFHKILEGFVTLAEMEVESVTVLYSVAGRNADALALYFGEDPARCPFEQVTGTLFHFTRSFLKAHEENCKHSIWGLQWRWTIWHPSMSERSSLNKNDTKQSLELAETLASHKGYSKTWIIPCCAEH 1338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26934156 26944077 + CmPI595203_04g012440.1 Cmu04g1244 414829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1244 1338 Coils Coil 1180 1200 - -
Cmu04g1244 1338 Gene3D - 205 336 - -
Cmu04g1244 1338 MobiDBLite consensus disorder prediction 707 824 - -
Cmu04g1244 1338 MobiDBLite consensus disorder prediction 707 723 - -
Cmu04g1244 1338 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Cmu04g1244 1338 PANTHER FORMIN-J 1 1283 IPR051144 -
Cmu04g1244 1338 SMART it6_source 897 1335 IPR015425 -
Cmu04g1244 1338 MobiDBLite consensus disorder prediction 869 883 - -
Cmu04g1244 1338 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Cmu04g1244 1338 MobiDBLite consensus disorder prediction 754 780 - -
Cmu04g1244 1338 Gene3D Formin, FH2 domain 899 1284 IPR042201 -
Cmu04g1244 1338 ProSiteProfiles Formin homology-2 (FH2) domain profile. 897 1299 IPR015425 -
Cmu04g1244 1338 MobiDBLite consensus disorder prediction 791 808 - -
Cmu04g1244 1338 MobiDBLite consensus disorder prediction 640 684 - -
Cmu04g1244 1338 SMART PTEN_C2_2 198 338 IPR014020 -
Cmu04g1244 1338 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 14 188 IPR029021 -
Cmu04g1244 1338 MobiDBLite consensus disorder prediction 810 824 - -
Cmu04g1244 1338 Pfam Formin Homology 2 Domain 905 1273 IPR015425 -
Cmu04g1244 1338 MobiDBLite consensus disorder prediction 726 743 - -
Cmu04g1244 1338 MobiDBLite consensus disorder prediction 836 883 - -
Cmu04g1244 1338 MobiDBLite consensus disorder prediction 837 855 - -
Cmu04g1244 1338 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cmu04g1244 1338 Pfam C2 domain of PTEN tumour-suppressor protein 198 336 IPR014020 -
Cmu04g1244 1338 SUPERFAMILY Formin homology 2 domain (FH2 domain) 795 1283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1244 Cmu-Chr4:26934156 Cmu05g1671 Cmu-Chr5:26685547 4.60E-246 dispersed
Cmu04g1244 Cmu-Chr4:26934156 Cmu06g1648 Cmu-Chr6:27607055 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1244 K28090 - csv:101221127 2120.89