Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1244 ATGGCGCTGTTTAGAAAATTATTCTACCGGAAGCCTCCAGATCGGCTTCTCGAGATCGCGGAGAGAGTGTACGTGTTTGATTGTTGCTTCTCTACCGAGGTGTTGGAGGAGGATGAGTACAGAGTGTACTTGGGTAGCATTATACCAAAGCTGCAAGACCACTTTCCGGATGCATCTTTCATGGTGTTTAACTTTAGTGAACGAAAGAGGAAGACTAAAACTTCGGATATCCTGTCTCAATATGGTATGACAGTGATGGAATATCCTCTTCAATATGAAGGGTGTTCACTACTGCCATTGGAGATGATCCACCACTTCATTCGGTCGAGTGAAAGTTGGTTGTCATTGGAGAGACAGAAAAATGTATTGTTGATGAACTGTGAACGAGGCGGATGGCCAATCCTTGCTTTCATGCTTTCAGGTCTTTTATTGTACCGTAAACAATATGAGGGGGAGCAGAAGACCCTTGAAATGGTCTATAGGCAAGCTCCTAGAGAACTTTTCCGTGTCCTATCTCCTGTTAACTCACAGCCTTCTCAAATGAGATACCTTCAGTATATTTCTAGGAGAAATTTAGGTTCTGATTGGCCTCCACCTGATACACCCCTAATTTTAGACTGTCTGATACTTCGAGAGCTTCCTATGCTTGGTGGAGGAAAAGGGTGGAGGCCTATCATACGCATTTACAGTCAGGACCCATTAACACCACGAAATAGAAGCCCAAAACTTGTCTTCTCGAGCGCAAAGAAGGAAAGACATGGTTGCCAGTATCTACAGGCAGCAAGCAGATTAGTAAAAGTGGATGTCCATTGTCACATTCAAGGTGATGTTGTTCTTGAATGCATCCGTTTAGATGGAGATCTAATACATGAGGAAGTGATGTTTAGAATTATGTTTCACACCGCATTTGTGCATTCAAACAGTTTGAAGCTCAATTGTGACGAGGTTGATGTTTTATGGGATGCCAAGGAGCAGTTTTCTAAAGATTTTAGAGCAGAGGTACTTTTTCTGGATGCTAATCATGTTGTGCCAAACAACCGTCCCTCGACCAGAAGTGATGATAAAATTGAGATTGAAAGCAATTCAACTGAGGAATTTTTTGAAGTGGAAGAAATATTTAGCAATATTGTTGACGTGCAGGAAGTTAAGAGGGATTATGATGTTCAAGCAGTACATGCTAACGAAACAGATTATATTGACCATCAACCAGTTTGGAAGGAGGATGCAGATCCTCCTACATTCCAACGCTGTAAATCATTTGGAGGGAGTCAAAACTTGGACAAGAAGATAGATTGTAACGTTGAAGCAGTGAAGGACATTACTGTTGATGATGTAACTTTCAAGACAGCTGAAAAAGTGGACTCTGGTCTTCAAGTAGTGAAGGACATTGTTGTGGATTATGGAGATAAGAAGCCAAATCCTCTGCTATTTTCTGTTAATGTACTGAGACGTATGGCAATCAAGGAACTGATTGATGATGCTTATGACAAGTTGGAAGGGGTGCAGCATAAAGGGTACGGAGAAGATACTGCCATTCCACACTTTGAATCAAAGGTTCCTTCGAAAAAGTTGGAAGCTGATGCGTGGAGGCTTAAATTTGAGAAGTTGCAATCAACGTCAAGGAAACAGCCGTCATCAACAATTAAGCCAATAAATCATGCAATTGTAGCTAAACAGAAAACCGAACAGCCAGAAGATCAGTTTCTTGTAAAACAGGCCAAACCAAATACTCTTTCTAGATTGATTTCACATGACAAAGAACCTTACACAAACTCCATGCATTTGTTTTATCCACCATCAAGGCATACTGGTGACTCAGCAACAGCTATTAGTTCTCCTACTAAAGATTTTTATTCATATTCAACTTTAAAATCTGCTTCTGCTTCTGCTACTTCAGGACTGCTGCTGTCTGATACAGCTGATGAACAAAAAAGTGACAAGGTGAGTCCTAAGAAACCTTTATGTTCTGCAACAGAGATTCTCAAGAGTAAACCACAATCACCACTTGACTCCTCAAGACCATTGCCAAACGCTGTTCACCATCAAGATCCTACTCTTCCTCTATCTGCTACTACACTTCTACAGCCACCAGCTCTTCAGGCCAACACATCTTTCTTGCATGCATCATCTCCTAAATCTTCTTTGTCTCCCTCTACACATTATCACAAAAATGCAAGATCTCCTCCTCCGGCTCCGCCTCCACCACCACCTCCTCCACCTAAAAGTTCATCATTAGTGTGTGGAAATACACTTAAGCATAGTGCTCCACCAGCACCACCTCCACCTCCCATACGTAGAGCTCAACCACAATTACCTCCCCCACGACCACCCTCATCACATGGAGCTCTGCTTTCTCCATGCCTATCAAATGCTGGAGCTTTTCCACCACCCCCTCCGCCACCTCCTCCAATTCAGAGGAGAGCTCCTCCACATTTAACCCAGGGGCAACAGGCTTTAACATCTGCAACAGCCTGTGTTGTCTCATCTTCCCTGCCATCTCCAATTTGTGAAGCACCATCACCTGCTCAACCTACAACTGGTCCCCTTCCCCCGGTTCCTTCTTCTTCTTCTAAACCTTCAGGAGGTATGACTCCACACCTGGGAGCTAAAGGAGTAAGTTCTTCAACTGATGTGAAAACATCATCTATAGTGAGGGGACGTGGGTTCTCGCGGTCAATTGGGATGGGGCTGGCTACTACAGGGCTTCAACGATCATCATTGAAACCTCTGCATTGGAGCAAGGTGACTCGGGTACTACAAGGGAGCTTATGGGAAGAATTGCAAAGATGCGGAGATTCTGAAAGTGCACCAGAATTTGATGTATCTGAGCTGGAGACGCTTTTCTCTGTGATTGTCCCTAAACCTATTGTTGATTCCGGAGGTAAATCTGGAGGACGAAGGAAGTCAGTTGGATCAAAATTGGACAAAGTTCACTTGATTGATCTTAGGAGGGCAAATAACACTGAAATCATGCTAACAAAAGTTAGGATGCCACTATCTGATATGATGGCAGCAGTACTCTCCATGGATGAGTCAGTACTAGATGTAGATCAAGTGGAAAATCTTATCAAATTTTGCCCCACCAAAGAGGAGATGGAGCTTCTCAAGGGATACTCTGGTGACAAGGATAAACTTGGCAAGTGCGAACAGTACTTTTTGGAGATGATGCAAGTTCCTCGTGTGGAGTCAAAGTTAAGAGTGTTTTCTTTCAAGATTCACTTCAGCTCTCAGATAGCAGAGTTCAAAAAAAGCCTAAACACTGTAAACTCTGTCTGTCAAGAGGTGAAGAATTCTCGCAAATTGAAGGAGATAATGAAGAGAATTCTTTGCCTGGGAAATATGCTGAACCAAGGAACAGCTAGGGGTTCGGCAATTGGATTCAGGTTGGATAGCCTCTCAAAACTCACTGATACACGTGCTTCTAACAATAAGTTGACTCTCATGCATTATCTGTGTAAGGTCCTTGCTTCGAAGTCACCATCACTTCTTGATTTTCATCTGGACCTTGGTAGCTTAGAAGCTGCGTCTAAGATACAATTGAAATCTTTGGCAGAAGAAATGCAGGCAATAACAAAAGGATTGGAAAAGGTGAAGCAGGAACTGGTTGCATCTGAAAGCGATGGCCCCATCTCTGAAACTTTTCATAAGATATTGGAAGGATTTGTTACTCTTGCCGAGATGGAGGTGGAATCTGTGACAGTTCTTTACTCAGTGGCGGGTAGAAATGCTGATGCACTTGCACTATATTTTGGCGAGGATCCTGCCCGTTGTCCATTTGAACAAGTTACAGGAACCCTCTTCCATTTTACAAGGTCCTTTTTGAAAGCACATGAAGAGAACTGCAAGCATTCAATCTGGGGGTTGCAATGGAGATGGACAATATGGCACCCGAGCATGTCAGAAAGATCCTCTTTAAACAAGAATGATACAAAACAGAGTTTGGAGCTGGCAGAAACTTTAGCCTCCCATAAGGGTTATTCTAAGACCTGGATCATACCATGCTGTGCCGAACACTGA 4017 43.07 MALFRKLFYRKPPDRLLEIAERVYVFDCCFSTEVLEEDEYRVYLGSIIPKLQDHFPDASFMVFNFSERKRKTKTSDILSQYGMTVMEYPLQYEGCSLLPLEMIHHFIRSSESWLSLERQKNVLLMNCERGGWPILAFMLSGLLLYRKQYEGEQKTLEMVYRQAPRELFRVLSPVNSQPSQMRYLQYISRRNLGSDWPPPDTPLILDCLILRELPMLGGGKGWRPIIRIYSQDPLTPRNRSPKLVFSSAKKERHGCQYLQAASRLVKVDVHCHIQGDVVLECIRLDGDLIHEEVMFRIMFHTAFVHSNSLKLNCDEVDVLWDAKEQFSKDFRAEVLFLDANHVVPNNRPSTRSDDKIEIESNSTEEFFEVEEIFSNIVDVQEVKRDYDVQAVHANETDYIDHQPVWKEDADPPTFQRCKSFGGSQNLDKKIDCNVEAVKDITVDDVTFKTAEKVDSGLQVVKDIVVDYGDKKPNPLLFSVNVLRRMAIKELIDDAYDKLEGVQHKGYGEDTAIPHFESKVPSKKLEADAWRLKFEKLQSTSRKQPSSTIKPINHAIVAKQKTEQPEDQFLVKQAKPNTLSRLISHDKEPYTNSMHLFYPPSRHTGDSATAISSPTKDFYSYSTLKSASASATSGLLLSDTADEQKSDKVSPKKPLCSATEILKSKPQSPLDSSRPLPNAVHHQDPTLPLSATTLLQPPALQANTSFLHASSPKSSLSPSTHYHKNARSPPPAPPPPPPPPPKSSSLVCGNTLKHSAPPAPPPPPIRRAQPQLPPPRPPSSHGALLSPCLSNAGAFPPPPPPPPPIQRRAPPHLTQGQQALTSATACVVSSSLPSPICEAPSPAQPTTGPLPPVPSSSSKPSGGMTPHLGAKGVSSSTDVKTSSIVRGRGFSRSIGMGLATTGLQRSSLKPLHWSKVTRVLQGSLWEELQRCGDSESAPEFDVSELETLFSVIVPKPIVDSGGKSGGRRKSVGSKLDKVHLIDLRRANNTEIMLTKVRMPLSDMMAAVLSMDESVLDVDQVENLIKFCPTKEEMELLKGYSGDKDKLGKCEQYFLEMMQVPRVESKLRVFSFKIHFSSQIAEFKKSLNTVNSVCQEVKNSRKLKEIMKRILCLGNMLNQGTARGSAIGFRLDSLSKLTDTRASNNKLTLMHYLCKVLASKSPSLLDFHLDLGSLEAASKIQLKSLAEEMQAITKGLEKVKQELVASESDGPISETFHKILEGFVTLAEMEVESVTVLYSVAGRNADALALYFGEDPARCPFEQVTGTLFHFTRSFLKAHEENCKHSIWGLQWRWTIWHPSMSERSSLNKNDTKQSLELAETLASHKGYSKTWIIPCCAEH 1338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26934156 26944077 + CmPI595203_04g012440.1 Cmu04g1244 414829

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1244 1338 Coils Coil 1180 1200 - -
Cmu04g1244 1338 Gene3D - 205 336 - -
Cmu04g1244 1338 MobiDBLite consensus disorder prediction 707 824 - -
Cmu04g1244 1338 MobiDBLite consensus disorder prediction 707 723 - -
Cmu04g1244 1338 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Cmu04g1244 1338 PANTHER FORMIN-J 1 1283 IPR051144 -
Cmu04g1244 1338 SMART it6_source 897 1335 IPR015425 -
Cmu04g1244 1338 MobiDBLite consensus disorder prediction 869 883 - -
Cmu04g1244 1338 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Cmu04g1244 1338 MobiDBLite consensus disorder prediction 754 780 - -
Cmu04g1244 1338 Gene3D Formin, FH2 domain 899 1284 IPR042201 -
Cmu04g1244 1338 ProSiteProfiles Formin homology-2 (FH2) domain profile. 897 1299 IPR015425 -
Cmu04g1244 1338 MobiDBLite consensus disorder prediction 791 808 - -
Cmu04g1244 1338 MobiDBLite consensus disorder prediction 640 684 - -
Cmu04g1244 1338 SMART PTEN_C2_2 198 338 IPR014020 -
Cmu04g1244 1338 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 14 188 IPR029021 -
Cmu04g1244 1338 MobiDBLite consensus disorder prediction 810 824 - -
Cmu04g1244 1338 Pfam Formin Homology 2 Domain 905 1273 IPR015425 -
Cmu04g1244 1338 MobiDBLite consensus disorder prediction 726 743 - -
Cmu04g1244 1338 MobiDBLite consensus disorder prediction 836 883 - -
Cmu04g1244 1338 MobiDBLite consensus disorder prediction 837 855 - -
Cmu04g1244 1338 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cmu04g1244 1338 Pfam C2 domain of PTEN tumour-suppressor protein 198 336 IPR014020 -
Cmu04g1244 1338 SUPERFAMILY Formin homology 2 domain (FH2 domain) 795 1283 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1244 K28090 - - csv:101221127 2120.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1244 Cmu-Chr4:26934156 Cmu05g1671 Cmu-Chr5:26685547 4.60E-246 dispersed
Cmu04g1244 Cmu-Chr4:26934156 Cmu06g1648 Cmu-Chr6:27607055 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g592 Blo04g00779 Blo16g00180 . . . Bpe13g00300 Bma06g00166 . . . Cma10g00209 Cma11g00123 Car10g00196 Car11g00171 . Cpe20g00055 Cpe04g01480 Bhi02g00293 Tan09g2089 . . Hepe09g0095 . . Cla06g01570 Cam06g1735 Cec06g1796 Cco06g1795 Clacu06g1702 Cmu06g1648 Cre06g2459 Cone2ag0827 Cone16ag0189 Cone13ag0054 . Lsi02g00091 Csa01g00571 Chy12g01523 Cme12g01971 . . Bda11g01706 Bda14g00861 . Bpe15g00594 Bma03g00847 . Sed08g0241 Cmo10g00227 Cmo11g00187 Cma13g01093 . Car13g00929 . . Cpe18g00780 Bhi08g01136 Tan05g2418 Cmetu02g1238 Lac10g0118 Hepe07g2490 . . Cla04g01181 Cam04g1237 Cec01g1748 Cco01g1794 Clacu04g1265 Cmu04g1244 Cre01g1538 Lsi06g01445 Csa01g00260 Chy02g02475 Cme02g01861
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu07g0289 . 181 1055 FH2 protein (formin) Gene Family AT3G25500 51.7 3.7e-190 662.5
Cmu11g0091 . 465 941 FH2 protein (formin) Gene Family AT3G25500 66.9 2.2e-166 583.6
Cmu02g1216 . 446 902 FH2 protein (formin) Gene Family AT3G25500 60.1 8.3e-142 501.9
Cmu03g2293 . 496 893 FH2 protein (formin) Gene Family AT3G25500 51.7 3.1e-104 377.1
Cmu07g0289 . 618 1072 FH2 protein (formin) Gene Family AT2G43800 60.1 1.3e-140 497.7
Cmu02g1216 . 480 918 FH2 protein (formin) Gene Family AT2G43800 55.1 9.2e-126 448.4
Cmu02g0849 . 283 595 FH2 protein (formin) Gene Family AT4G15200 55.3 3.5e-52 203.0
Cmu05g1539 . 564 710 FH2 protein (formin) Gene Family AT4G15200 66.7 3.4e-47 186.4
Cmu05g1539 . 565 1001 FH2 protein (formin) Gene Family AT5G54650 69.2 4.4e-168 589.0
Cmu02g0849 . 449 912 FH2 protein (formin) Gene Family AT5G54650 63.1 4.1e-158 555.8
Cmu07g0289 . 629 1030 FH2 protein (formin) Gene Family AT5G54650 50.6 7.2e-102 369.0
Cmu02g1216 . 31 921 FH2 protein (formin) Gene Family AT5G67470 58.3 2.2e-236 815.8
Cmu07g0289 . 610 1072 FH2 protein (formin) Gene Family AT5G67470 58.9 9.9e-136 481.5
Cmu11g0091 . 478 923 FH2 protein (formin) Gene Family AT5G67470 60.6 1.1e-131 468.0
Cmu03g2293 . 496 895 FH2 protein (formin) Gene Family AT5G67470 50.9 9.0e-105 378.6
Cmu05g2548 . 349 832 FH2 protein (formin) Gene Family AT1G59910 52.1 7.4e-126 448.7
Cmu07g0289 . 650 1031 FH2 protein (formin) Gene Family AT5G48360 52.3 1.0e-99 361.7
Cmu02g1216 . 504 879 FH2 protein (formin) Gene Family AT5G48360 50.5 1.6e-89 327.8
Cmu02g1216 . 484 878 FH2 protein (formin) Gene Family AT3G05470 52.0 3.6e-106 383.3
Cmu05g1539 . 570 984 FH2 protein (formin) Gene Family AT3G05470 50.4 6.2e-106 382.5
Cmu07g0281 . 982 1293 FH2 protein (formin) Gene Family AT1G42980 50.8 5.9e-69 258.1
Cmu07g0281 . 1 1300 FH2 protein (formin) Gene Family AT1G31810 66.0 0.0e+00 1225.7
Cmu06g1291 . 1 1245 FH2 protein (formin) Gene Family AT1G31810 51.0 1.4e-241 833.6
Cmu06g1648 . 1383 1704 FH2 protein (formin) Gene Family AT5G07650 74.8 1.6e-129 460.7
Cmu04g1244 . 980 1284 FH2 protein (formin) Gene Family AT5G07650 71.1 2.2e-118 423.7
Cmu05g1671 . 1107 1429 FH2 protein (formin) Gene Family AT5G07650 65.0 3.7e-110 396.4
Cmu06g1291 . 935 1254 FH2 protein (formin) Gene Family AT5G07650 62.9 1.1e-109 394.8
Cmu07g0281 . 966 1297 FH2 protein (formin) Gene Family AT5G07650 59.6 3.5e-108 389.8
Cmu06g1648 . 1310 1697 FH2 protein (formin) Gene Family AT5G07770 69.2 1.5e-140 496.9
Cmu04g1244 . 903 1282 FH2 protein (formin) Gene Family AT5G07770 63.8 9.4e-127 451.1
Cmu05g1671 . 1031 1421 FH2 protein (formin) Gene Family AT5G07770 59.4 1.2e-118 424.1
Cmu06g1291 . 858 1246 FH2 protein (formin) Gene Family AT5G07770 57.3 4.4e-116 415.6
Cmu07g0281 . 902 1291 FH2 protein (formin) Gene Family AT5G07770 55.2 2.8e-115 412.9
Cmu05g1671 . 1023 1429 FH2 protein (formin) Gene Family AT3G32400 76.2 1.3e-169 593.2
Cmu06g1291 . 865 1255 FH2 protein (formin) Gene Family AT3G32400 69.2 2.8e-148 522.3
Cmu06g1648 . 1310 1704 FH2 protein (formin) Gene Family AT3G32400 65.2 8.7e-142 500.7
Cmu07g0281 . 902 1296 FH2 protein (formin) Gene Family AT3G32400 65.5 9.6e-141 497.3
Cmu04g1244 . 873 1282 FH2 protein (formin) Gene Family AT3G32400 58.6 7.6e-130 461.1
Cmu05g1671 . 21 1429 FH2 protein (formin) Gene Family AT2G25050 51.1 0.0e+00 1156.7
Cmu06g1291 . 1 1255 FH2 protein (formin) Gene Family AT2G25050 53.6 2.0e-290 995.7
Cmu06g1648 . 1311 1704 FH2 protein (formin) Gene Family AT5G07780 63.0 1.7e-123 439.9
Cmu04g1244 . 904 1284 FH2 protein (formin) Gene Family AT5G07780 58.2 2.0e-111 399.8
Cmu05g1671 . 1032 1422 FH2 protein (formin) Gene Family AT5G07780 54.3 3.3e-103 372.5
Cmu07g0281 . 903 1292 FH2 protein (formin) Gene Family AT5G07780 52.0 8.2e-102 367.9
Cmu06g1291 . 865 1254 FH2 protein (formin) Gene Family AT5G07780 53.8 1.8e-101 366.7
Cmu06g1648 . 1 1713 FH2 protein (formin) Gene Family AT5G07740 60.6 0.0e+00 1133.2
Cmu06g1648 . 1382 1711 FH2 protein (formin) Gene Family AT5G07760 74.4 3.3e-128 456.4
Cmu04g1244 . 979 1282 FH2 protein (formin) Gene Family AT5G07760 70.5 3.2e-115 413.3
Cmu06g1291 . 934 1254 FH2 protein (formin) Gene Family AT5G07760 64.7 5.3e-110 396.0
Cmu05g1671 . 1106 1438 FH2 protein (formin) Gene Family AT5G07760 64.0 2.0e-109 394.0
Cmu07g0281 . 976 1297 FH2 protein (formin) Gene Family AT5G07760 60.1 3.9e-105 379.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001040 2 2 4 3 2 2 4 2 2 2 2 2 4 2 2 5 2 4 4 2 2 2 4 2 2 3 3 6 3 1 82