Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1247 ATGAAGAACGGAATCGCGTTTTGTTTAGGTTCTGGTTTAGCGGTTATGGATTGCAAGGAGCTCAATTTAAACGAAGATTGTGGTGGCTGTGGTAGCGGGGGAAAGAATGGGGGAGATGGGTTTATAGACAGGAGCAAAGTGAGGATTTTGCTGTGCGATAATGATTCAAAAAGTTCAGAAGAGGTTTTCAAGCTTCTTTTGAAATGTTCCTACCAGGTCATTTCCGTGAGTTCTGCTAGGCAGGTCATTGATGCTTTGAATGCGGAGGGACCTGAAATCGATATTATACTCTCGGAAGTTGATCTGCCAATGGCCAAAGGTATGAAAATGTTGAAGTATATCACCCGGGATAAAGAGCTCCGACGCATTCCTGTTATCATGATGTCAACACAAGATGAGGTCCCTATTGTCGTTAAGTGCTTGAGGCTTGGAGCAGCTGACTATCTTGTAAAGCCTTTACGGACAAATGAGCTATTAAACTTGTGGACGCACATGTGGAGAAGAAGACGCATGCTTGGACTGGCGGAAAAAAACATTTTGAATTATGAATTTGATATGGTGGCATCAGACCCAAGTGATGCTAATACGAATAGTACTACTTTGTTCTCGGATGACACTGATGACAAGTCACGTAGGAGCACAAATCCAGATATGGCAATTGCTGCGACCCATCAGGAAGATGAGTCTGGTATTGCCGCCGCACTTGTAGAGCCTCCTGCTGTTCATACAGTGAAACATCAGCCAGATGTACCTGGAATCAGTGAGCGTCGAACAGGGCAACCTTCATCATGTCCTAGAAAGAGTGAACTAAAGATTGGGGAATCATCCGCATTCTTTACCTATGTCAAATCAAGAGCTGTGAAAAATAAGGCAGTAGATGTTGAAGATAATGCTAAACGACTTTTGCTGGACGAAAATCATCAAGAAACTAGTCATCGTGCAGCTCATCTTCCCCCAATACAAGAAAATGGGGAGGCCTTGGAAAGCCATTCCCAAGGAGACGAATTCCCAAGCAGTAGTTTTCCTGATTCTTTTTCTGTGGAGAGATCTTGTACACCACCTGCTGGCACAGAAGTTCACAGGGAAAGAAACATCAATGAAGAAAATTGCTCTCAAGCCCTTGTGCATCCTCGAGATGGATCTCAGGTTGATATGTCAGGCCTACCTGTGCAAACACAAACTGCTTATCCTTTTTATATGCCGGAAGGTATGATGTCGGCGCAACTGTACCAAAAAAACCTGCATGATATGCAAAATCATGCGGCAATGATGTCACAGTATGGACATTTTCATCATTGCCCTCCCAATGTAAGTGGGGTGGCGTCTTATCCTTATTACCCTATGAATATATGTTTACAACCTGGTCAAATGCCAACTAGCACTACTCATATTCATTCATGGCCATCTTTTGGGAATTCATCTTCCAATGAAGCAAAATCGAACAAATTTGATAGAAGAGAGGCAGCACTGATTAAATTTAGGCAGAAAAGGAAAGAACGCTGTTTTGATAAGAAGATTAGGTATGTTAATAGGAAACGGCTTGCAGAGAGGAGGCCTCGTGTTCGGGGTCAGTTTGTGAGAAAGGTAAATGGTGTCAATGTAGATCTTAATGGACAACCTGCATCTGTTGATGATGTCGAGGATGAAGACGAGGAGGAGGAACTACTATCAAGGGATTCCTCTCATGAGGATGATGGGAAGCAAGCAAGTGCTCATATTTACTGCTTGCAATCTCAATGTTGGCAAGAGATCCGATTCTGCCTGCTGTTACATGTCCATTTGCTTGCACCGGGTCCTTGTAGCCTTGCGGTTACTGCACAAACAGATTCAACTCGTTTGGGGCATAGATGGTGTCTGATAAGCTTGCCCTGTGCTTCAACACACTGCAAAGGCAGGAGCTTGTCTCAGTTCCAATCTGCTGCTACTGGAATATCCATCTATAGTATAATAAATCCAAACAAGAATTCGATCTGGCAAAACGAGGCATTCAGCATAGCTGCAATGCTTCTTGCTGCCTCTCTCTCTGAGATACAAGCTAAACACTGCCATCTTGTTTCATTTTCCAATTTGAAGGCAGTACTTTCTGTTGAGCTAATAACAGTGATCGATTCAATTGTGCGACTTGTTGCAGTAGTTGACTGA 2142 43.37 MKNGIAFCLGSGLAVMDCKELNLNEDCGGCGSGGKNGGDGFIDRSKVRILLCDNDSKSSEEVFKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAKGMKMLKYITRDKELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILNYEFDMVASDPSDANTNSTTLFSDDTDDKSRRSTNPDMAIAATHQEDESGIAAALVEPPAVHTVKHQPDVPGISERRTGQPSSCPRKSELKIGESSAFFTYVKSRAVKNKAVDVEDNAKRLLLDENHQETSHRAAHLPPIQENGEALESHSQGDEFPSSSFPDSFSVERSCTPPAGTEVHRERNINEENCSQALVHPRDGSQVDMSGLPVQTQTAYPFYMPEGMMSAQLYQKNLHDMQNHAAMMSQYGHFHHCPPNVSGVASYPYYPMNICLQPGQMPTSTTHIHSWPSFGNSSSNEAKSNKFDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQPASVDDVEDEDEEEELLSRDSSHEDDGKQASAHIYCLQSQCWQEIRFCLLLHVHLLAPGPCSLAVTAQTDSTRLGHRWCLISLPCASTHCKGRSLSQFQSAATGISIYSIINPNKNSIWQNEAFSIAAMLLAASLSEIQAKHCHLVSFSNLKAVLSVELITVIDSIVRLVAVVD 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26954695 26960407 - CmPI595203_04g012470.1 Cmu04g1247 414832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1247 713 PANTHER TWO-COMPONENT RESPONSE REGULATOR 45 242 IPR045279 GO:0009736(InterPro)
Cmu04g1247 713 MobiDBLite consensus disorder prediction 542 558 - -
Cmu04g1247 713 Pfam Response regulator receiver domain 49 160 IPR001789 GO:0000160(InterPro)
Cmu04g1247 713 SMART REC_2 47 162 IPR001789 GO:0000160(InterPro)
Cmu04g1247 713 MobiDBLite consensus disorder prediction 332 351 - -
Cmu04g1247 713 MobiDBLite consensus disorder prediction 536 565 - -
Cmu04g1247 713 MobiDBLite consensus disorder prediction 325 364 - -
Cmu04g1247 713 Gene3D - 47 258 - -
Cmu04g1247 713 ProSiteProfiles Response regulatory domain profile. 48 166 IPR001789 GO:0000160(InterPro)
Cmu04g1247 713 ProSiteProfiles CCT domain profile. 486 528 IPR010402 GO:0005515(InterPro)
Cmu04g1247 713 MobiDBLite consensus disorder prediction 244 268 - -
Cmu04g1247 713 MobiDBLite consensus disorder prediction 192 214 - -
Cmu04g1247 713 Pfam CCT motif 486 528 IPR010402 GO:0005515(InterPro)
Cmu04g1247 713 SUPERFAMILY CheY-like 45 173 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0906 Cmu-Chr4:23557105 Cmu04g1247 Cmu-Chr4:26954695 2.00E-12 dispersed
Cmu04g1247 Cmu-Chr4:26954695 Cmu11g0338 Cmu-Chr11:3883216 4.00E-15 dispersed
Cmu11g1240 Cmu-Chr11:24326424 Cmu04g1247 Cmu-Chr4:26954695 1.00E-05 dispersed
Cmu04g1247 Cmu-Chr4:26954695 Cmu06g1276 Cmu-Chr6:23871806 2.80E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6048 PF00072 Response_reg 1.20E-16 CL0304 Cmu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1247 K12127 - csv:101220107 982.245