Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1254 ATGGGATTTGTTGGGATATTGGTAATGGGATTTTTGTGTTTGTGCTCTTTGGTTCATGGCTATGGTGGACGCTGGATCAATGACGCTCATGCTACTTTCTATGGCGGCCCCGATGCTTCTGGTACTTTGGGTGGGGCTTGTGGTTATGGGAATGTATATAGCGCGGACTATGGGATTAAAACGACGGCGTTGAGTCCAGCATTGTTCGACAATGGGTTGAGTTGTGGGGCTTGTTTTGAGGTTAGGTGTGTGAATAACCAAAAATGCCTTCCCGGCTCCGTCGTGGTCACCGCCACCAACTTCTGTCCTCCCGGCGGTTGGTGCGCCCCTTCCCTCCACCATTTTGATCTCTCTCAACCTGCCTTCCAAACCATCGCTCAATCCATCGCCGGGGTCGTCCCCGTTGCTTATCGAAGGGTTAAATGTGCAAGAAAGGGAGGAATAAAGTTCAGAATAGAAGGGAATCCAAACTTCAATTTGGTGCTAATAAGCAATGTGGGAGGCGCTGGAGACGTTCATGCAGTTTACATCAAAGGGGGAAGGAATGGTTGGAAGGCAATGGTTAGAAATTGGGGTCAAAATTGGCAAAGCAATGATAATCTTGTAGGACAGTCCCTTTCTTTTAAGGTCATTACTAGTGATGGTCACTCACTTGTGTCTTACAATGTTGCCCCTTCTAGTTGGTCCTTTGGACAAACCTTTGTTGGTAGACAGTTCCCTTAA 723 47.58 MGFVGILVMGFLCLCSLVHGYGGRWINDAHATFYGGPDASGTLGGACGYGNVYSADYGIKTTALSPALFDNGLSCGACFEVRCVNNQKCLPGSVVVTATNFCPPGGWCAPSLHHFDLSQPAFQTIAQSIAGVVPVAYRRVKCARKGGIKFRIEGNPNFNLVLISNVGGAGDVHAVYIKGGRNGWKAMVRNWGQNWQSNDNLVGQSLSFKVITSDGHSLVSYNVAPSSWSFGQTFVGRQFP 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26999717 27002226 + CmPI595203_04g012540.1 Cmu04g1254 414839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1254 240 CDD DPBB_EXPA_N 28 142 - -
Cmu04g1254 240 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
Cmu04g1254 240 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576(InterPro)
Cmu04g1254 240 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576(InterPro)
Cmu04g1254 240 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Cmu04g1254 240 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576(InterPro)
Cmu04g1254 240 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576(InterPro)
Cmu04g1254 240 Pfam Expansin C-terminal domain 148 225 IPR007117 -
Cmu04g1254 240 PRINTS Expansin signature 146 158 IPR002963 GO:0009664(InterPro)
Cmu04g1254 240 PRINTS Expansin signature 193 214 IPR002963 GO:0009664(InterPro)
Cmu04g1254 240 PRINTS Expansin signature 94 104 IPR002963 GO:0009664(InterPro)
Cmu04g1254 240 PRINTS Expansin signature 222 238 IPR002963 GO:0009664(InterPro)
Cmu04g1254 240 PRINTS Expansin signature 56 70 IPR002963 GO:0009664(InterPro)
Cmu04g1254 240 PRINTS Expansin signature 122 135 IPR002963 GO:0009664(InterPro)
Cmu04g1254 240 PRINTS Expansin signature 105 122 IPR002963 GO:0009664(InterPro)
Cmu04g1254 240 PRINTS Expansin signature 158 179 IPR002963 GO:0009664(InterPro)
Cmu04g1254 240 PANTHER EXPANSIN-A15 11 239 IPR002963 GO:0009664(InterPro)
Cmu04g1254 240 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 147 IPR007112 -
Cmu04g1254 240 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 236 IPR007117 -
Cmu04g1254 240 FunFam Expansin 147 239 - -
Cmu04g1254 240 SUPERFAMILY PHL pollen allergen 144 235 IPR036749 -
Cmu04g1254 240 Pfam Lytic transglycolase 61 137 IPR009009 -
Cmu04g1254 240 SUPERFAMILY Barwin-like endoglucanases 25 165 IPR036908 -
Cmu04g1254 240 Gene3D - 145 239 IPR036749 -
Cmu04g1254 240 Gene3D - 16 143 IPR036908 -
Cmu04g1254 240 SMART dpbb_1 61 137 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1254 Cmu-Chr4:26999717 Cmu11g0982 Cmu-Chr11:15107540 1.90E-86 dispersed
Cmu04g1254 Cmu-Chr4:26999717 Cmu05g2469 Cmu-Chr5:33667992 2.60E-91 wgd
Cmu04g1254 Cmu-Chr4:26999717 Cmu06g1663 Cmu-Chr6:27751933 2.10E-93 wgd
Cmu04g1254 Cmu-Chr4:26999717 Cmu09g1739 Cmu-Chr9:33422439 1.90E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1254 - - - 0.0