Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1256 ATGGTTGCATTGATTTTTGGCTGTCCGGCCCTATTTTTGCACCGGAAGATCATTCTTAGTCTCCGCCATCTGCATTCCACCGGTTCTTTAATTAATCGATTTGGTCTGGTTTTCGAGAATTTCTGGAATGGATCTGTTTTTCCTGTTTGCTGGGAGTATTTTTCTAGTATGATGATGTGGCTACTACGAACTCAATCTGCTCTTGTGCAACTACAATTGGAAGAGCGCCTACTTCGAAACTCATCTGATAATTGGTGTATCATAAATGATGGAACAGATAATCCAACTGTTGTGATGGGCGTTTCTGGGAAACCTGATGAGCTCCTTGACATCAAATCTGTGTTAGGGGATCAAATTCCGGTCATCAGAAGGTTCACAGGGGGTGGAACTGTTATTGTTGATCACAACACAGTATTTGTCACCTTCATATGTAATAAAGATGCTGTTTCCGGACTAAAACCATTTCCTCAACCTATTATGTCCTGGAGTAGTCTATTATATAATAAAGTATTCCAAGGAACTGATTTTCATCTTCGGGAAAATGATTATGTCTTTGGTAACCGCAAGTTTGGTGGCAATGCTCAGTCCATTACTAAAAGCCGATGGATCCACCATACATCTTTTCTGTGGGACTATGAGGTTAGGAATATGACATATCTGAAACATCCAAAACGGGTTCCTGATTACCGTGAGGCAAGGAGCCATTTGGAATTTTTATGCAGCTTGAAGGACTACATGCCAAGACAGTCCCACAACAAGGATGCTGACAGAGCAAGAATTGGAAACAGCTGCAGCCGAAATCTTAGGCTGACCTTTCGTGCGATCTTGGTTAAGCTGAAAATAAAGAAATTAGAGAGCACTGGTAGCAGGCAAGTGACTTACTCTAAGAGAAGAAATGGGATTATGAAGAAAGCAAGGGAGCTAGCTATACTCTGCGATATTGATATCGTTCTCCTCATGTTTTCGCCAAGTGGAAAGCCGGCGCTATATGAAGGTGAACGCAGCAACATCGAGGAGGTCATTACAAAATTTGCTGAATTGACTCCACAGGAGAGGGCAAAAAGGAAAATGGAAAGCCTTGAAGTGCTAAAGAAAACATTCAAGAAGTTAGACCACGATGTTAACATAAATGATTTTGTGGGTTCAAGCTCTCAAGATTTTGAGGAATTGACCAATGAAGTTGCCGTATTGCGAGATCAGATTGGCAAAGCGCATAAGAGACTGAGCTATTGGAGGAATCCTGATAGTATCAACAATATAGAGCAGCTTCAGCAGATGGAAGATCTAATAAGGGAGTCCCTAAACCAGACACGTCTACACAAGGAAAATTTAAGAAGACATCAACTACTCTCACAGGACTTCACGGGCCAGTATCCGGGTGGTGGAATGTCCTTACCTTTGTTAATGGACGAAATGCAAGGCACTCAACCTCTGTTATGGCTTCCCAGCTATAGCACTCAACAGATCACCTTACCAAATGAGCCTAGCTTTCTGCAACCAGGTGATGTTGAATGCTCATTTCCAAGCTATCCCAGTTTCTTCAACCCTGGGAACAAAACTGAAGCTGGAATCTCTGGTCAAGTTGATAGCATGCCACAAGGTGATGGGGCTTTAAATGAATTAAGTGGAACTTCTTGCTCAACACTGCAACTTGGTGATCAATATCCATACCCTACATGTGATGGTTCCAGCTTCCAAGATGAAAAGAAACTGAAAATTGAGATGGAGATGAACTTGCATGCAACTTGTGTGGACACTCAACTAAATGGCAAGTTGGAGCTCTCTAGATCTCTATATGATGATGACCAGTATCCTTGGGCTGCTATACCAGGGCCTTGTAGCATTCCAATGTACCAAAGCAATGCATATCACCATCAGCCAAATTGA 1887 42.24 MVALIFGCPALFLHRKIILSLRHLHSTGSLINRFGLVFENFWNGSVFPVCWEYFSSMMMWLLRTQSALVQLQLEERLLRNSSDNWCIINDGTDNPTVVMGVSGKPDELLDIKSVLGDQIPVIRRFTGGGTVIVDHNTVFVTFICNKDAVSGLKPFPQPIMSWSSLLYNKVFQGTDFHLRENDYVFGNRKFGGNAQSITKSRWIHHTSFLWDYEVRNMTYLKHPKRVPDYREARSHLEFLCSLKDYMPRQSHNKDADRARIGNSCSRNLRLTFRAILVKLKIKKLESTGSRQVTYSKRRNGIMKKARELAILCDIDIVLLMFSPSGKPALYEGERSNIEEVITKFAELTPQERAKRKMESLEVLKKTFKKLDHDVNINDFVGSSSQDFEELTNEVAVLRDQIGKAHKRLSYWRNPDSINNIEQLQQMEDLIRESLNQTRLHKENLRRHQLLSQDFTGQYPGGGMSLPLLMDEMQGTQPLLWLPSYSTQQITLPNEPSFLQPGDVECSFPSYPSFFNPGNKTEAGISGQVDSMPQGDGALNELSGTSCSTLQLGDQYPYPTCDGSSFQDEKKLKIEMEMNLHATCVDTQLNGKLELSRSLYDDDQYPWAAIPGPCSIPMYQSNAYHHQPN 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27004751 27014444 - CmPI595203_04g012560.1 Cmu04g1256 414841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1256 628 PANTHER BIOTIN/LIPOATE A/B PROTEIN LIGASE FAMILY 58 252 IPR053264 -
Cmu04g1256 628 CDD LplA 59 248 - -
Cmu04g1256 628 Gene3D - 291 369 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu04g1256 628 ProSiteProfiles Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) catalytic domain profile. 82 272 IPR004143 GO:0036211(InterPro)
Cmu04g1256 628 PRINTS MADS domain signature 311 332 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu04g1256 628 PRINTS MADS domain signature 276 296 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu04g1256 628 PRINTS MADS domain signature 296 311 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu04g1256 628 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 284 327 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu04g1256 628 Pfam Lipoyl protein ligase A/B catalytic domain 67 251 IPR004143 GO:0036211(InterPro)
Cmu04g1256 628 SUPERFAMILY SRF-like 278 368 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu04g1256 628 FunFam Agamous-like MADS-box protein AGL30 287 369 - -
Cmu04g1256 628 SUPERFAMILY Class II aaRS and biotin synthetases 58 252 IPR045864 -
Cmu04g1256 628 Coils Coil 387 407 - -
Cmu04g1256 628 ProSiteProfiles MADS-box domain profile. 278 334 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu04g1256 628 Gene3D Bira Bifunctional Protein; Domain 2 53 290 IPR045864 -
Cmu04g1256 628 SMART madsneu2 277 333 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1256 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1256 Cmu-Chr4:27004751 Cmu08g1107 Cmu-Chr8:23400926 2.20E-12 dispersed
Cmu04g1256 Cmu-Chr4:27004751 Cmu05g2470 Cmu-Chr5:33672133 1.20E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g564 . . . . . Bpe13g00296 Bma06g00169 . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0841 . . . Lsi02g00079 Csa01g00557 Chy12g01535 Cme12g01985 . . Bda11g01704 . . . . . Sed08g2077 . . . . . . . . Bhi08g01153 Tan05g2433 Cmetu12g0183 . Hepe07g2503 . . Cla04g01192 Cam04g1249 Cec01g1760 Cco01g1807 Clacu04g1279 Cmu04g1256 Cre01g1549 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012582 0 5 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6050 PF00319 SRF-TF 2.50E-19 No_clan Cmu TF